Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 102 / 8e-26 F-box family protein (.1) AT1G74875 99 / 5e-25 unknown protein AT2G35280 62 / 7e-12 F-box family protein (.1) AT5G50450 53 / 4e-08 HCP-like superfamily protein with MYND-type zinc finger (.1) AT3G30430 48 / 3e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 332 / 3e-116 AT1G74875 110 / 2e-29 unknown protein Potri.015G096200 [exp] 64 / 6e-12 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 58 / 8e-10 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037978 [exp] 166 / 8e-51 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 164 / 4e-50 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10030128 [exp] 140 / 3e-41 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10022147 [exp] 124 / 5e-36 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10005844 [exp] 120 / 1e-34 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 94 / 2e-24 AT1G74875 66 / 6e-14 unknown protein Lus10038720 [exp] 85 / 2e-20 ND 41 / 8e-05 Lus10006434 [exp] 77 / 2e-16 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 66 / 1e-12 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10037021 [exp] 60 / 2e-10 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G321400.1 pacid=42790465 polypeptide=Potri.001G321400.1.p locus=Potri.001G321400 ID=Potri.001G321400.1.v4.1 annot-version=v4.1 ATGTCGCGGCATAGCACGGGCTGTAAATCTAGGTTTGCTCGAAAAGAAAAACATGAAGGGAAGAAGAAAAGCTTTCCTGGAGATTTATTAACAGAAGCTC TTGCTCGCGTGGCCTCTACATCGTTTTCAGATCTCTTCACAGCTAAATTAAGTTGCAAAGAGTTTCTCGAAGCAGCATCAGAGAAGTATATTTTTGAACA CATCACAATCGAGAAATTCCCAGTTATTCCTTGGAGGATTAGCCACAGTGCCTCCTGTTTCTTGGACAGTTGCAAGGAGAATGGAAATCCTGAAGCTTTA TTTAGACAAGGAATGTTCGAGTTCTTTAGTTCCAAGAAACCAGAATCAGGGTTTCAACACTTAGAGAAGGCGGCCAAAAAAGGGCATGTAGAAGCAATAC ACACATGCGGTATTATCATTGTATGCCATGGCGGGCAATTTAAACAAGAGGGTATAGAACTGCTTTCTTCTTCGAAGAGCTGCAAATCAAGACACTGGAC AATTAAAGAGTGTAGAAACAAAATAAAAGGGATTCTTCAAAGCATGTGGATAGACAAAAGTGAAGGTGATATTGGACCCAAGAACCATGGAAGAACCTGC AACTGTAGCAAGTTTACTAAGAGAGGATGGATTGATGAAGAAGAGTGTACGATTCTTGCGTTTGGGACCATGAGGCAACTCTGTTTTGTAACATTCTAA
AA sequence Show only first row Show all	>Potri.001G321400.1 pacid=42790465 polypeptide=Potri.001G321400.1.p locus=Potri.001G321400 ID=Potri.001G321400.1.v4.1 annot-version=v4.1 MSRHSTGCKSRFARKEKHEGKKKSFPGDLLTEALARVASTSFSDLFTAKLSCKEFLEAASEKYIFEHITIEKFPVIPWRISHSASCFLDSCKENGNPEAL FRQGMFEFFSSKKPESGFQHLEKAAKKGHVEAIHTCGIIIVCHGGQFKQEGIELLSSSKSCKSRHWTIKECRNKIKGILQSMWIDKSEGDIGPKNHGRTC NCSKFTKRGWIDEEECTILAFGTMRQLCFVTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67623			F-box family protein (.1)		Potri.001G321400 [exp]	0	1
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	3.00	0.8429
AT5G09270			unknown protein		Potri.005G066900 [exp]	4.58	0.7791
AT1G31335			unknown protein		Potri.006G127000 [exp]	9.38	0.8219
AT5G09310			unknown protein		Potri.007G106200 [exp]	11.66	0.7253
					Potri.001G215166 [exp]	12.24	0.7752
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.002G117400 [exp]	15.36	0.7839
AT2G35320		ATEYA	EYES ABSENT homolog (.1)		Potri.001G144000 [exp]	16.24	0.7656
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.017G026300 [exp]	19.28	0.6930
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.009G046400 [exp]	19.97	0.7537
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.014G153500 [exp]	23.45	0.7482	AXR1.3

Compare expression of checked genes

Potri.001G321400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.