Plant FIBer expression Database

SBP.1 (Potri.001G321600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SBP.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14030 826 / 0 SBP1 selenium-binding protein 1 (.1.2)
AT4G14040 818 / 0 SBP2, EDA38 EMBRYO SAC DEVELOPMENT ARREST 38, selenium-binding protein 2 (.1)
AT3G23800 801 / 0 SBP3 selenium-binding protein 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G060000
[exp]
955 / 0 AT4G14030 806 / 0.0 selenium-binding protein 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037336
[exp]
877 / 0 AT4G14030 815 / 0.0 selenium-binding protein 1 (.1.2)
Lus10035760
[exp]
872 / 0 AT4G14030 808 / 0.0 selenium-binding protein 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF05694 SBP56 56kDa selenium binding protein (SBP56)
Representative CDS sequence
>Potri.001G321600.1 pacid=42789375 polypeptide=Potri.001G321600.1.p locus=Potri.001G321600 ID=Potri.001G321600.1.v4.1 annot-version=v4.1
ATGGCTACAGGGACAGAAGTGGTGAGTGCTCATGGACATGGATGCTGCAAGAAAGGACCAGGTTATGCTAGCCCACTTGAAGCCATGTCTGGTCCAAGAG
AGTCACTTATTTATGTCACTTGTGTTTACGCTGGAACGGGAATAGAGAAGCCTGATTATCTAGCCACAGTGGATGTAGATCCCAACTCACCTAATTATTC
GAAAGTTATCCACAGGCTACCTATGCCAAACTTAGGAGATGAACTACATCATTCAGGGTGGAATTCTTGTAGCTCTTGTCATGGAGATCCATCAGCAGCC
AGGCGTTATCTGATCCTTCCTTCATTGATATCTGGTCGCATATATGCAATTGACACACTAAAAGATCCAAGGGCTCCCTCATTGCATAAAGTTGTTGAGC
CTGCGGATATTGTAAATAAGACAGGATTAGCATATCCACACACATCCCATTGCCTTGCTTCTGGAGATGTCATGGTATCATGCCTAGGAGATAAAGATGG
AAAGGCAGAGGGAAACGGATTTCTTCTACTTGATTCAGAATTCAACGTAAAGGGGAGGTGGGAGAAACCAGGGCACAGTCCGAAATTTGGTTATGATTTC
TGGTACCAACCTCGACACAACACCATGATTAGCTCCTCATGGGGAGCTCCTGCAGCCTTCACTAAAGGCTTCAATCCGCAACATGTTTCAGATGGTCTTT
ATGGGAGGCATTTGCATGTCTACAGTTGGCCTAATGGTGAACTGAAACAGACATTGGATCTTGGCAGTACTGGACTCTTGCCCTTGGAGATAAGGTTCCT
TCACAATCCTTCTAAAGATACAGGGTTTGTTGGATGTGCCTTAACAAGTAACATGGTACGATTTTTCAAGACCCCTGATGAATCATGGAGCCATGAGTTG
GCAATATCAGTGAAACCATTGAAGGTGCAAAACTGGATTCTTCCAGAAATGCCAGGGCTTATAACTGATTTTCTCTTATCTCTTGACGATCGGTTTCTAT
ATTTTGTCAACTGGCTGCATGGAGATGTCAGACAGTACAACATTGAGGACCCCAAAAATCCTGTCCTGAAAGGACAAGTCTGGGTTGGGGGGCTGATCCA
AAAAGGAAGCCCAGTAGTTGCTGAGGGTGAAGATGGAAAAACCTGGCAGTATGATGTTCCAGAAATCCAGGGACATCGATTGAGAGGAGGGCCTCAAATG
ATTCAGCTGAGTCTAGACGGGAAGCGGCTTTATGTCACCAACTCACTTTTCAGTACTTGGGATCGTCAGTTTTATCCAGAAGTCGTGGAGAAAGGATCTC
ATATGTTACAGATAGATGTTGACACTGAGAAAGGTGGTCTTGCAATAAATCCAAACTATTTTGTAGACTTTGCATCTGAACCTGATGGACCTTCCCTAGC
CCATGAGATGAGATACCCAGGAGGTGACTGCACATCAGATATATGGATCTAA
AA sequence
>Potri.001G321600.1 pacid=42789375 polypeptide=Potri.001G321600.1.p locus=Potri.001G321600 ID=Potri.001G321600.1.v4.1 annot-version=v4.1
MATGTEVVSAHGHGCCKKGPGYASPLEAMSGPRESLIYVTCVYAGTGIEKPDYLATVDVDPNSPNYSKVIHRLPMPNLGDELHHSGWNSCSSCHGDPSAA
RRYLILPSLISGRIYAIDTLKDPRAPSLHKVVEPADIVNKTGLAYPHTSHCLASGDVMVSCLGDKDGKAEGNGFLLLDSEFNVKGRWEKPGHSPKFGYDF
WYQPRHNTMISSSWGAPAAFTKGFNPQHVSDGLYGRHLHVYSWPNGELKQTLDLGSTGLLPLEIRFLHNPSKDTGFVGCALTSNMVRFFKTPDESWSHEL
AISVKPLKVQNWILPEMPGLITDFLLSLDDRFLYFVNWLHGDVRQYNIEDPKNPVLKGQVWVGGLIQKGSPVVAEGEDGKTWQYDVPEIQGHRLRGGPQM
IQLSLDGKRLYVTNSLFSTWDRQFYPEVVEKGSHMLQIDVDTEKGGLAINPNYFVDFASEPDGPSLAHEMRYPGGDCTSDIWI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14030 SBP1 selenium-binding protein 1 (.1... Potri.001G321600
[exp]
0 1 SBP.1
Potri.018G018700
[exp]
1.41 0.7831
AT4G33360 FLDH farnesol dehydrogenase, NAD(P)... Potri.002G127400
[exp]
13.63 0.7520
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Potri.015G138900
[exp]
14.89 0.7530
AT5G13550 SULTR4;1 sulfate transporter 4.1 (.1) Potri.008G049500
[exp]
40.79 0.6755
AT5G15730 CRLK2, AtCRLK2 calcium/calmodulin-regulated r... Potri.017G101400
[exp]
68.33 0.6634
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Potri.015G143700
[exp]
72.44 0.6463
AT3G15810 Protein of unknown function (D... Potri.001G192000
[exp]
90.63 0.6317
AT1G04340 HR-like lesion-inducing protei... Potri.008G165100
[exp]
91.10 0.6151
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Potri.017G066900
[exp]
119.33 0.6149
AT2G37110 PLAC8 family protein (.1) Potri.016G087200
[exp]
130.42 0.5997

Potri.001G321600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.