Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14050 809 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 464 / 1e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 454 / 2e-150 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 447 / 5e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 437 / 1e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 435 / 1e-143 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 426 / 3e-140 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G08070 419 / 2e-137 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 414 / 3e-137 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 413 / 6e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 471 / 5e-157 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 454 / 2e-150 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G086200 [exp] 449 / 2e-149 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 445 / 4e-149 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 441 / 4e-148 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 450 / 7e-148 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 442 / 1e-146 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 439 / 4e-146 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 437 / 2e-145 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018278 [exp] 901 / 0 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040634 [exp] 771 / 0 AT4G14050 705 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 436 / 2e-143 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 426 / 2e-139 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 427 / 8e-139 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 421 / 2e-138 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 412 / 2e-136 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 416 / 1e-135 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014298 [exp] 411 / 1e-135 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 417 / 2e-135 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G321700.1 pacid=42788807 polypeptide=Potri.001G321700.1.p locus=Potri.001G321700 ID=Potri.001G321700.1.v4.1 annot-version=v4.1 ATGTTACCATCAAACTTCTTAAGGTTGTTGGATTCACAGAGCAAACTCTATTTGGGTTGCCAGGACTTGTCCACGCTAATCCCCTCCTATCTTCACCGCC TCAAACTCTGCACCAAACACCAAGCCCCATTAAATGCCAAAAAACTCCATGCCCAGATCGTTAAAAGTGGCCTAAACCAATGCCAACCCTTACCCAACAC GCTCTTGGATGCATATGGCAAATGTAATCTGCTTCAAGATGCACATTACCTGTTCGACGAAATGCCTCAAAGGGACCATGTCTCCTGGGCCTCGATTCTC ACTGCATACAATCAAGCAAAGCTCCCCAACAAGACTCTATCTATTTTCCATTATATGTTCACTACTGATAGGCTTCAACCGGACCATTTTGTGTATGCCA CTCTCCTTAAGGCGTGCGCTAGCTTATGCTCTTTAAGGCTAGGCAAACAAGTGCATGCTCGCTTTGTTTTATCCCCTTTTGTTGATGATGATGTTGTTAA ATCATCTTTGGTTGATATGTATGCAAAATGTGGATTGCCAAGTATTGCGCGTAGTGTATTTGACTCAATTTTGGTGAAAACTTCAGTTTCTTGGACCGCA ATGTTATCTGGGTATGCTAGGAGTGGGTTAAAAGATGAGGCTATGGAGTTATTTTTGAGGACTCCAGTAAGGAATTTGTATTCTTGGACTGCTTTGATAT CTGGATTGGTGCAGAGTGGATATTGTATTGATGGTTGTTATATGTTTATTGAAATGAGAAGAGAAGGGGTTGATATAGTAGACCCATTAGTCCTTTCAAG TGTAGTTGGTGCTTGTGCTAATTTAGCAGTTTTGGGACTTGGAAAGCAAATTCATGGCCTAGTTATTGGTTCTGGCTATGAATCTTGCTTGTTTATAAGC AATGCACTTGTGGACATGTATGCAAAATGCAGTGATATTTTAGCAGCCAGGAATGTTTTTAATAGAATGCTTCATAGAGATGTTGTCTCGTGGACTTCTA TAATAGTTGGGGCAGCTCAGCATGGAAGAGCCAAGGAAGCATTGGATTTATATGATCAAATGGTTTTAGCTGAAATAAAACCAAATGAAGTGACCTTTGT TGGATTGATCTATGCTTGCAGCCATGCTGGGTTAGTTAGCAAGGGCCGAAAACTTTTTAAGGCGATGATTGAGGATTATAGGATTAGTCCCTCCTTGCAA CTCTTCACATGCTTCTTGGACCTTCTTAGTCGATCTGGGCACCTCAACGAGGCTGAGGATCTGATTAAAACAATGCCGCATAAGCCTGATGAACCTACAT GGGCAGCTTTATTAAGCGCTTGCAAACACCATGGAAATACTGAAATGGGAGTGAGGATTGCTGATCGTCTACTGAGCTTGAATATGCATGAGCCTTCAAC CTATGTACTGTTATCTAATGTTTATGCAGGTGCTGGTAAGTGGGAACAGATGTCAAGAGTTAGAAAGTTGATGACAGATATGGAAGTTAAGAGGAAGCCT GGTTATAGTTCCATTGACCTTGGAAAGGAAAGCCAAGTATTTCATGCTGGGGAAACATGTCATCCCATGAAGGATGAAATATTTGGTTTGCTTAAAGAAT TAGATGCAGAGATGAGGAAAAGGGGTTATATACCTGATACTAGCTATGTTTTACATGACATGGAAGAGCAAGAGAAAGAGCGGGAGCTTTTCTGGCATAG TGAGAGATGGGCTGTAGCTTATGGACTGCTTAAGGCTGTTCCAGGAACAGTTATACGGATTGTGAAAAATCTTCGTATTTGTGGAGATTGCCATACCTTT CTCAAACTCACTAGTAGCATTGTGCATAAAGAAATTATTGTCCGAGATGCCACAAGGTATCATCATTTTAAAGATGGAAGATGTTCATGCAATGATTTTT GGTGA
AA sequence Show only first row Show all	>Potri.001G321700.1 pacid=42788807 polypeptide=Potri.001G321700.1.p locus=Potri.001G321700 ID=Potri.001G321700.1.v4.1 annot-version=v4.1 MLPSNFLRLLDSQSKLYLGCQDLSTLIPSYLHRLKLCTKHQAPLNAKKLHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASIL TAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTA MLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFIS NALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQ LFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKP GYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTF LKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	0	1
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	4.00	0.9320
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	4.47	0.9353
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	4.58	0.9364
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	4.79	0.9467
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	6.92	0.9211
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	7.00	0.9328
AT1G50910			unknown protein		Potri.011G136400 [exp]	7.07	0.8950
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	8.36	0.9258
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	9.74	0.9343
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	11.00	0.9249

Compare expression of checked genes

Potri.001G321700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.