Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23790 1016 / 0 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) AT4G14070 967 / 0 AAE15 acyl-activating enzyme 15 (.1) AT5G27600 209 / 9e-58 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 195 / 7e-53 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G47240 189 / 6e-51 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G23850 169 / 4e-44 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 167 / 3e-43 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 162 / 1e-41 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 156 / 7e-40 AMP-dependent synthetase and ligase family protein (.1) AT2G04350 157 / 9e-40 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060100 [exp] 1321 / 0 AT3G23790 1024 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Potri.013G021300 [exp] 218 / 5e-61 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 196 / 3e-53 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.002G192400 [exp] 180 / 8e-48 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 171 / 8e-45 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.001G091900 [exp] 170 / 2e-44 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 162 / 8e-42 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.014G169400 [exp] 161 / 3e-41 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.009G109900 [exp] 160 / 5e-41 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008884 [exp] 1042 / 0 AT3G23790 977 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10023224 [exp] 970 / 0 AT3G23790 905 / 0.0 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1) Lus10029918 [exp] 220 / 2e-61 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 215 / 1e-59 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 193 / 5e-52 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10002454 [exp] 183 / 2e-48 AT5G27600 1088 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10032840 [exp] 171 / 8e-45 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 169 / 5e-44 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10002414 [exp] 169 / 6e-44 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10023832 [exp] 167 / 1e-43 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.001G321800.2 pacid=42789471 polypeptide=Potri.001G321800.2.p locus=Potri.001G321800 ID=Potri.001G321800.2.v4.1 annot-version=v4.1 ATGACTACTGCTACACCACTTTCTGCTTCTTCTTTTTCATCAAATCGAATGGCAATGGTTTCTTCAACTTTTAGCTCTGATTATTATGGTACTGGCGCCG CTGATATTACTAAAAGGCATGCTGCTTTTCAGTTCTTGGTCTCTCGCTATCATTTCAACAACTCTAAAATGTTCCTTCAGAAACAACGAAACTATGGGTT CTCTGCACGTCGAGGATTTCGAGTTTCTTGCGAAACCAAGACAGAGGAGATTAAGATAAGAAGGTGTTCACCTAACCTAGAAAGTGCACTAGTTTCCAGA AATGGTGCCTTGACCTCTGATGACTGGAGAGCAGTTCCTGACATTTGGAGGTCTTCAGCAGAGAAATATGGCGATCAGGTTGCAGTGGTAGATCCGCATC ATGATCCACCTACAAGTATGACTTATAAACAGCTGGAGGAGGAAATTTTAGATTTTTCTGAAGGCCTGAGGGTTATTGGAGTTAAGCCAGATGAGAAACT TGCACTTTTTGCTGATAATTCATACCGGTGGCTTGTTGCAGATCAAGGTATGATGGCCATGGGAGCAGTTGATGTGGTGAGGGGATCAAGATCATCTGTT GAAGAGCTATTACAAATATACAATCACTCTGAAAGTGTTGCACTTGCAGTGGACAATCCTGAATTGTTCAATCGAATTGCAGAAACATTTTCTTCCAAGG CAGCTCCCAGATTTGTCATTCTACTCTGGGGAGAGAAGTCAAGCCTTACTATCAACGTAATGGAGGGGATACCTATTTTTAATTACAAGGAGATAATAGA TTTGGGGCGAGAGAGCCGTAAGGCTTTCTTTGATTCTGGTGATGCTAGGCAGCACTACAAATATGAAACAATAAGCTCTGATGATATTGCTACACTTGTT TATACTAGTGGAACCACTGGAAATCCAAAGGGTGTGATGCTTACACATAAGAATCTGCTGCACCAGATAAATAATTTTTGGGAAATTGTGCCTGCCCAAC CTGCAGACAGATTTCTGAGTATGCTTCCACCTTGGCATGCATATGAGCGAGCTTGTGAGTATTTCATATTTGCAAATGGAGCTGAGCAAGTATACACAAC TGTCAGAAATTTTAAGGTTGATCTGCAGCAATATCAGCCGCATTACCTAATCTCCGTTCCTTTAGTATTTGAGACACTTTATAGTGGGATACAAAAACAG ATTTCTAAAAGCTCAACTCTTCGTAAACTTCTTGCATTTACCTTCATAAAGATCAGCTTGGCATACATGGAGATGAAGAGAATTTATGAGGGAACTTATC TTACAAGGTCTCAGAATGAACAGTCATATTTTGTTTCAATACTGGGCTGGTTACGGGCAAGAATCTTTGCTGCAATCTTGTTGCCAGTACATATGTTGGC TGAGAAGCTTGTATACAGTAAAATTCAGTCAGCAATCGGAATAAGAAAGGCTGGTGTTAGTGGAGGTGGTAGTTTACCTGCACATGTTGACAAGTTTTTT GAGGCAATTGGAGTTGTGTTGCTGAATGGATACGGTATGACGGAGTCATCTCCAGTTCTAGCTGCTCGACAACTTAGCAATAATGTTCTTGGTTCAGTTG GGCATCCAATTCGGCATACAGAATTTAAAATTGTAGATGCTGAAACTGGAAAATCTCTTCCATATGGTTCAAAAGGGATTGTAAGAGTCAGGGGGCCGCA AGTGATGAAAGGTTACTACAAGAATCCATTGGCCACAAAGCAAGCTGTAGATGAGGATGGTTGGCTAAACACTGGTGATTTAGGTTGGATAGCTCCTTAC CATTCAAGAGGGAAAAGCCGTCGCTGTGGAGGGATTATTGTTCTTGAAGGTCGTGCTAAGGATACTATAGTTCTTTCGACAGGTGAAAATGTTGAGCCCT TGGAGCTTGAGGAAGCTGCAATGAAGAGTAGTCTTATTCAACAGATTGTTGTTATTGGCCAGGACCAACGTCGTCTTGGAGCTATAGTTGTTCCAAACAA AGAGGAGGTTCTAGAGGTTGCAAAAAAGTTGTCCATTGTAGATGCAGATGCCACTGAGCTGAGTAAGAAACAGATCGCCAACCTGCTAGACAAAGAATTG AGGAAGTGGACATCAGAGGCTTCTTTTCAAATTGGACCAGTCCTTGTTATCGATGAGTCTTTTACAATCGACAGTGGCTTGATGACCCCAACAATGAAAA TCCGAAGAGACAAAGTTGTAGCGCTATACGAAGAACAGATAGCCAATCTCTACAAGTAG
AA sequence Show only first row Show all	>Potri.001G321800.2 pacid=42789471 polypeptide=Potri.001G321800.2.p locus=Potri.001G321800 ID=Potri.001G321800.2.v4.1 annot-version=v4.1 MTTATPLSASSFSSNRMAMVSSTFSSDYYGTGAADITKRHAAFQFLVSRYHFNNSKMFLQKQRNYGFSARRGFRVSCETKTEEIKIRRCSPNLESALVSR NGALTSDDWRAVPDIWRSSAEKYGDQVAVVDPHHDPPTSMTYKQLEEEILDFSEGLRVIGVKPDEKLALFADNSYRWLVADQGMMAMGAVDVVRGSRSSV EELLQIYNHSESVALAVDNPELFNRIAETFSSKAAPRFVILLWGEKSSLTINVMEGIPIFNYKEIIDLGRESRKAFFDSGDARQHYKYETISSDDIATLV YTSGTTGNPKGVMLTHKNLLHQINNFWEIVPAQPADRFLSMLPPWHAYERACEYFIFANGAEQVYTTVRNFKVDLQQYQPHYLISVPLVFETLYSGIQKQ ISKSSTLRKLLAFTFIKISLAYMEMKRIYEGTYLTRSQNEQSYFVSILGWLRARIFAAILLPVHMLAEKLVYSKIQSAIGIRKAGVSGGGSLPAHVDKFF EAIGVVLLNGYGMTESSPVLAARQLSNNVLGSVGHPIRHTEFKIVDAETGKSLPYGSKGIVRVRGPQVMKGYYKNPLATKQAVDEDGWLNTGDLGWIAPY HSRGKSRRCGGIIVLEGRAKDTIVLSTGENVEPLELEEAAMKSSLIQQIVVIGQDQRRLGAIVVPNKEEVLEVAKKLSIVDADATELSKKQIANLLDKEL RKWTSEASFQIGPVLVIDESFTIDSGLMTPTMKIRRDKVVALYEEQIANLYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	0	1
AT5G18130			unknown protein		Potri.013G057200 [exp]	1.00	0.9542
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	1.73	0.9446
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	2.00	0.9472
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	2.23	0.9380
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	5.29	0.9415
					Potri.008G181801 [exp]	5.47	0.9268
AT2G28780			unknown protein		Potri.006G082000 [exp]	5.83	0.8797
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G118035 [exp]	6.70	0.8663
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	6.92	0.9300
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.012G023700 [exp]	7.41	0.9184

Compare expression of checked genes

Potri.001G321800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.