Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrPht3-2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 533 / 0 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 471 / 3e-167 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 282 / 1e-93 PHT3;3 phosphate transporter 3;3 (.1) AT5G48970 66 / 8e-12 Mitochondrial substrate carrier family protein (.1) AT3G53940 58 / 3e-09 Mitochondrial substrate carrier family protein (.1) AT4G01100 57 / 6e-09 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G25380 57 / 8e-09 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G51050 57 / 1e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G24570 56 / 1e-08 DIC2 dicarboxylate carrier 2 (.1) AT4G32400 56 / 1e-08 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G060800 [exp] 587 / 0 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 517 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 506 / 0 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 296 / 3e-99 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 273 / 7e-90 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.006G099800 [exp] 70 / 4e-13 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 69 / 7e-13 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.007G019000 [exp] 64 / 3e-11 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G024100 [exp] 63 / 6e-11 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041519 [exp] 537 / 0 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 535 / 0 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 526 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 523 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 278 / 2e-91 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 276 / 9e-91 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 259 / 5e-82 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10033948 [exp] 63 / 7e-11 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 63 / 8e-11 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 63 / 8e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.001G322300.1 pacid=42792340 polypeptide=Potri.001G322300.1.p locus=Potri.001G322300 ID=Potri.001G322300.1.v4.1 annot-version=v4.1 ATGGATTCTCATAGACAACAGTCACTGATCCCTAGCTTCCTCTACTCCTCTTCTTCCTACGCTAAGACTCTCACCCTCTCTACGCTCCTCCACTCCGATC AACCTTCTCTTTCTCCGTCGTTAACCCCGGCTATGGGGAGGAAGAGCAGTGGCGGATTTGTGATCCCGGCTCCGAGTGAGCCTGGGAAAAGGATCGAGAT GTACTCACCTGCTTTCTATGCTGCTTGTACTGTTGGTGGTATTCTTAGCTGTGGACTTACTCATACGACTGTTACTCCTCTTGACCTTGTCAAGTGTAAT ATGCAGATTGACCCTGCCAAGTACAAGAGCATCTCATCTGGTTTTGGAGTTCTACTCAAGGAGCAAGGAGTGAGAGGCTTCTTCAGGGGTTGGGTGCCTA CCCTTCTTGGTTACAGTGCTCAGGGGGCCTGCAAATTTGGATTCTATGAGTTCTTTAAGAAGTACTACTCTGATCTTGCTGGGCCTGAGAATGCAGCCAA GTACAAGACCTTGATTTACCTTGCTGGTTCCGCGTCTGCTGAGGTGATTGCAGATATTGCTCTTTGCCCCTTTGAGGCGGTGAAGGTTCGAGTTCAAACT CAGCCTGGGTTTGCTAGAGGCTTGTCTGATGGAATGCCTAAGTTTGTGAAAGCTGAAGGTGCTCTTGGGTTGTACAAAGGTATCGTTCCTCTCTGGGGTC GCCAGATACCATATACAATGATGAAGTTTGCATCTTTTGAGACTATTGTAGAGATGATCTACAAGTATTCCATCCCCGTGCCAAAGGACCAGTGCAGCAA GTCTCTGCAGCTTGGTGTTAGCTTTGCTGGTGGTTATGTTGCTGGTGTGTTTTGTGCTATTGTGTCACATCCCGCAGATAATCTTGTCTCTTTCCTGAAC AATGCTAAAGGGGCAACTGTTGGTGATGCTGTGAAGAAGCTAGGTGTGTGGGGTCTGTTCACTCGTGGGCTGCCTCTCCGTATTGTCATGATTGGAACAC TTACCGGAGCTCAGTGGGGAATCTATGATGCATTCAAAGTTTTTGTGGGATTGCCTACTACTGGTGGTGCTGCCCCTGCTGCTGCCCCCGCAAAGGTATA A
AA sequence Show only first row Show all	>Potri.001G322300.1 pacid=42792340 polypeptide=Potri.001G322300.1.p locus=Potri.001G322300 ID=Potri.001G322300.1.v4.1 annot-version=v4.1 MDSHRQQSLIPSFLYSSSSYAKTLTLSTLLHSDQPSLSPSLTPAMGRKSSGGFVIPAPSEPGKRIEMYSPAFYAACTVGGILSCGLTHTTVTPLDLVKCN MQIDPAKYKSISSGFGVLLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPENAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQT QPGFARGLSDGMPKFVKAEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMIYKYSIPVPKDQCSKSLQLGVSFAGGYVAGVFCAIVSHPADNLVSFLN NAKGATVGDAVKKLGVWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAAAPAKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	0	1	PtrPht3-2
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	1.00	0.9578
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	2.44	0.9395	PtrAtpB_1,ATP.1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.011G079700 [exp]	2.82	0.9287	Pt-I.1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	4.24	0.9344
AT5G08690			ATP synthase alpha/beta family...		Potri.008G126600 [exp]	5.09	0.9100	ATP.2
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.010G162800 [exp]	5.19	0.9155
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	6.48	0.9233
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	7.07	0.9280	Pt-ANT1.1
AT4G29870			Oligosaccharyltransferase comp...		Potri.018G139600 [exp]	7.21	0.8979
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	7.41	0.9119

Compare expression of checked genes

Potri.001G322300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.