Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38580 46 / 5e-06 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT1G71050 45 / 1e-05 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 45 / 1e-05 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 44 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 44 / 3e-05 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 41 / 0.0005 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 41 / 0.0006 Heavy metal transport/detoxification superfamily protein (.1) AT4G39700 39 / 0.001 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135300 [exp] 51 / 1e-07 AT4G38580 234 / 3e-80 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.004G175400 [exp] 50 / 2e-07 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.002G092200 [exp] 49 / 3e-07 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 47 / 2e-06 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 45 / 3e-05 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 43 / 6e-05 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.017G123400 [exp] 43 / 6e-05 AT5G17450 220 / 4e-75 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Potri.005G110400 [exp] 43 / 7e-05 AT5G66110 189 / 2e-62 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 42 / 7e-05 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019789 [exp] 48 / 1e-06 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 48 / 1e-06 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10039419 [exp] 45 / 1e-05 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1) Lus10031495 [exp] 45 / 3e-05 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10041879 [exp] 44 / 3e-05 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10028426 [exp] 44 / 3e-05 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10009115 [exp] 42 / 0.0002 AT5G17450 206 / 5e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028531 [exp] 42 / 0.0002 AT5G17450 207 / 1e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016812 [exp] 40 / 0.0006 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 40 / 0.0008 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G322401.1 pacid=42793623 polypeptide=Potri.001G322401.1.p locus=Potri.001G322401 ID=Potri.001G322401.1.v4.1 annot-version=v4.1 ATGACGACGTTGAAGTTGAGTGGATTCTGCGACTGTGAAGGATGCTGGCGTAAGGTGAATGATGCTCTCTCCGGTATCAAAGGGATTAAAGGGAGATTAA CAGACAAAAAGAAGTTCCTTGTCGCTGTCACTGGCGCTGTGGACACTGAAGCCTTGAAAGCAAGATTGGCTAAGATAAGAAAGGGTGTCAAGGTTGAGGT TATATTCCAAGGTGACGGGGAAAAGAAGGAAGAAGAAAAGAAGCCAAAAGAGGAAGCTAATTTTAATGGGCCCTATGATGATCCCCAACCCAATGCTTAT TTTAATGGGCCTTATAATGATCCCCAACCCCAAGGTCTTGCCGATGGTAGTGGGCTCTATAATGATCCCCAACCCTATGCTTATTTTAATGGGTCCTATA ATGATCCCCGACTCCTCGGTCTTGCTGATGGTAGTGGGCTCTATAATGATCCCCAACCCTATACTTATTTTAATGGGTCCTATAACGATCCCCAACCCCT AGGTCTTGCTGATGGTAGTGGACCCTATAATGATGCCGAAGCTGGTCCATCCAATAGAGGGGGAAATAGTACTGAGCCCATGGGTGAACAGAACTTAGAA CACGAGCTTGCAAGATATCTGTGTGATTATGGGCTTGACTATGGCCCACACTTTCCTTTTGGCAAAGATGTCGTCCCACCCTATGTTTATTTTAATGGGT CCTATAATGATCCCCAACCCCCAGGTCTTGCTGATGGTAGTGGGTCCTATAATAATCCCCCACCCCAAGGTCTTGTTAATGGTAGTGGGCCCTATAGTTA TCCCCCGGCCCAAGACCAAGCTCATGGTAACGGGCCCTATAATTATCACCCATCGCAAGACTTTGCTGATGAAATTTCCAATGCATGTTCTATTATGTGA
AA sequence Show only first row Show all	>Potri.001G322401.1 pacid=42793623 polypeptide=Potri.001G322401.1.p locus=Potri.001G322401 ID=Potri.001G322401.1.v4.1 annot-version=v4.1 MTTLKLSGFCDCEGCWRKVNDALSGIKGIKGRLTDKKKFLVAVTGAVDTEALKARLAKIRKGVKVEVIFQGDGEKKEEEKKPKEEANFNGPYDDPQPNAY FNGPYNDPQPQGLADGSGLYNDPQPYAYFNGSYNDPRLLGLADGSGLYNDPQPYTYFNGSYNDPQPLGLADGSGPYNDAEAGPSNRGGNSTEPMGEQNLE HELARYLCDYGLDYGPHFPFGKDVVPPYVYFNGSYNDPQPPGLADGSGSYNNPPPQGLVNGSGPYSYPPAQDQAHGNGPYNYHPSQDFADEISNACSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71050		HIPP20	heavy metal associated isopren...		Potri.001G322401 [exp]	0	1
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	5.56	0.8042
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G257300 [exp]	6.48	0.8006
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Potri.001G138400 [exp]	18.22	0.7907
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	21.67	0.8034
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	27.00	0.7689
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	28.14	0.7125
AT4G00840			DHHC-type zinc finger family p...		Potri.014G104000 [exp]	31.46	0.7373
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	33.91	0.7807
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.002G135500 [exp]	41.58	0.7759	Pt-RAB6.1
AT5G56140			RNA-binding KH domain-containi...		Potri.001G471000 [exp]	42.95	0.7304

Compare expression of checked genes

Potri.001G322401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.