Plant FIBer expression Database

Pt-DET3.1 (Potri.001G322500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-DET3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12840 625 / 0 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G061100
[exp]
645 / 0 AT1G12840 645 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031990
[exp]
620 / 0 AT1G12840 665 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Lus10035159
[exp]
615 / 0 AT1G12840 663 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03223 V-ATPase_C V-ATPase subunit C
Representative CDS sequence
>Potri.001G322500.1 pacid=42792376 polypeptide=Potri.001G322500.1.p locus=Potri.001G322500 ID=Potri.001G322500.1.v4.1 annot-version=v4.1
ATGACGAGTAGATACTGGGTAGTTTCTCTTCCGGTTGAAAACTCAGCTTCTTCTGTGTGGAACCGTTTGCAAGAACAAATCTCAAAGCACTCTTTTGATA
CACCTCTCTACAGGTTTAATATCCCTAATCTTCGTGTTGGAACCCTCGATTTACTCCTTGCCCTTAGTGATGATCTCGTCAAGTCGAGTAACTTTATAGA
AGGAGTGTCACACAAGACCAGGAGACAGATTGAGGAATTTGAGAGGGTATCAGGTGTGGAGAGCAATGCTTTGACAGTTGATGGTGTGCCAGTTGACTCT
TACCTAACCAGGTTTGTTTGGGATGAAGCAAAATACCCAACAATGTCTCCTCTAAAAGAGATTGTGGATAGTATCCATAGTCAAGTGGCGAAGATTGAGG
ATGACCTCAAGGTTCGTGTTGCTGAGTATAATAATGTACGTAGCCAGCTCAATGCTATCAATCGGAAGCAGAGTGGAAGCTTAGCTGTTCGTGATCTTTC
GGATTTGGTGAAAACAGAGGACATTATTATCTCTGAACACCTCATAACCCTCCCCGCAATTGTTCCCAAGTATTCACAGAAGGACTGGTTGGCAAGCTAT
GAAACATTGACTGACTATGTGGTTCCCAGGTCCTCCAAGAAGTTACATGAAGATAATGAATATGCTCTTTACACAGTAACACTATTTAAGCGCGTGGCAG
ACAATTTTAGAACAAATGCCCGTGAAAAAGGGTTCCAAATTCGCGATTTTGAATATAGTCCAGAAGCACAAGAGAGCAGGAAGCAAGAGTTAGAAAGACT
GGTGCAGGACCAAGAAAGTTTGAGAAGTTCTCTTTTGCAGTGGTGCTATACTAGTTATGGAGAGGTTTTCAGCTCTTGGATGCATTTTTGTGCTGTTCGT
GTCTTTGCAGAGAGCATTCTCAGATATGGATTGCCCCCATCATTTTTGGCTTGTGTTTTATCTCCTACTACGAAAAGCGAGAAGAAAGTACGTTCAATCC
TTGAAGGATTTTGTGACAATTCAAACAGCACGCACTGGAAATCTGAAGATGAAATGGGAGGAGGGATCTTCGGTTTGGGAGGCGAAGCTGATACTTATCC
TTACCCGTCCTTCACAATCAATCTTGTTTGA
AA sequence
>Potri.001G322500.1 pacid=42792376 polypeptide=Potri.001G322500.1.p locus=Potri.001G322500 ID=Potri.001G322500.1.v4.1 annot-version=v4.1
MTSRYWVVSLPVENSASSVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDLLLALSDDLVKSSNFIEGVSHKTRRQIEEFERVSGVESNALTVDGVPVDS
YLTRFVWDEAKYPTMSPLKEIVDSIHSQVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKTEDIIISEHLITLPAIVPKYSQKDWLASY
ETLTDYVVPRSSKKLHEDNEYALYTVTLFKRVADNFRTNAREKGFQIRDFEYSPEAQESRKQELERLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR
VFAESILRYGLPPSFLACVLSPTTKSEKKVRSILEGFCDNSNSTHWKSEDEMGGGIFGLGGEADTYPYPSFTINLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Potri.001G322500
[exp]
0 1 Pt-DET3.1
AT5G17530 phosphoglucosamine mutase fami... Potri.008G039200
[exp]
2.23 0.9127
AT1G71070 Core-2/I-branching beta-1,6-N-... Potri.008G128000
[exp]
5.19 0.9078
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.006G230400
[exp]
6.32 0.9136 Pt-ATKEA4.3
AT1G14020 O-fucosyltransferase family pr... Potri.008G090600
[exp]
6.78 0.9273
AT4G35335 Nucleotide-sugar transporter f... Potri.016G113200
[exp]
9.64 0.9152
AT3G09740 ATSYP71, SYP71 syntaxin of plants 71 (.1) Potri.006G129500
[exp]
11.83 0.9217 Pt-SYP71.3
AT3G18060 transducin family protein / WD... Potri.015G041200
[exp]
11.95 0.9051
AT2G22260 oxidoreductase, 2OG-Fe(II) oxy... Potri.006G004500
[exp]
14.86 0.9022
AT3G19260 LOH2, LAG1 HOMO... LONGEVITY ASSURANCE GENE1 HOMO... Potri.009G101800
[exp]
15.23 0.9094
AT3G24530 AAA-type ATPase family protein... Potri.018G081000
[exp]
16.58 0.9069

Potri.001G322500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.