Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) AT5G02930 164 / 5e-45 F-box/RNI-like superfamily protein (.1) AT3G28410 160 / 3e-43 F-box/RNI-like superfamily protein (.1) AT5G02700 155 / 2e-41 F-box/RNI-like superfamily protein (.1) AT3G03360 150 / 7e-40 F-box/RNI-like superfamily protein (.1) AT5G03100 141 / 6e-38 F-box/RNI-like superfamily protein (.1) AT5G02910 145 / 7e-38 F-box/RNI-like superfamily protein (.1.2) AT1G57690 101 / 2e-23 F-box/RNI-like superfamily protein (.1) AT1G13570 101 / 6e-23 F-box/RNI-like superfamily protein (.1) AT1G66300 101 / 9e-23 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 120 / 2e-29 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 113 / 7e-27 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 106 / 2e-24 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.002G132400 [exp] 105 / 2e-24 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 93 / 5e-20 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.010G134200 [exp] 89 / 1e-18 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 82 / 2e-16 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024200 [exp] 81 / 3e-16 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G042900 [exp] 78 / 4e-15 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034415 [exp] 93 / 1e-20 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 92 / 7e-20 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 89 / 1e-18 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 86 / 1e-17 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10027244 [exp] 70 / 1e-12 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 69 / 4e-12 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 68 / 1e-11 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10032432 [exp] 67 / 1e-11 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10020748 [exp] 66 / 2e-11 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 63 / 2e-11 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G322900.1 pacid=42792282 polypeptide=Potri.001G322900.1.p locus=Potri.001G322900 ID=Potri.001G322900.1.v4.1 annot-version=v4.1 ATGAGGCAGCCTAGTGAGAGCTCAGTGAATGCCACACTCTGGGATTCTACGACTTTTTACAGGACACGGAATCTAAAAAACAATCCTCTGAAAAGGCCAA GGTCATGTCAAAACAAGGAGTGCCAAAAAGTAGACCGCATTAGCAATCTACCTGATCCCATCATCCAACACATCCTCTCTTTCTTGCCTGCTGATGATGC GATCAAAACATGCATATTATCAAAGCGGTGGGACTCTATTTGGACTTTAGTGCCAAATCTCATATTTCGCCGTGAATGTTCTTGCTCTCAAGAAGCTGAA AATTTTGCTGTCTTCGTTGACAAAGCTCTGATGCACTACTGCTCCCCAAAGGTGAAGAAGTTCCTTGTGGAGTTTGAGTTCACTGAATGTTTCAAGGCTC AAGTTGACTCGTGGGTGGACTTTGCTGTACGTCTCAAGGTGGAGGAGCTTTGTTTGGAGTTTCATAGAGAAATTGCTGATGATCCTGACTATTATTACTT GCCTAATTTTTTGTACAGCAATATCCCTGCAGAGAAACTGAGTCTAAGATTCTGTGCTTTATCTCCTAATAAGCTGAAGCAAGTTTCTTGGATGTCATTG AAGGTTTTATCCATCTCATATAGCTGGTTATCCAATGAGATGATTAAAAACATTTTTTTAGGCTGCTCCTTACTTGAGTACTTGAAATTGAATCAGTGCT GTGGCTTTGATCAGATTAATACTAATTTCAGTTCAAGTTTAAAAGATCTAGTGGTGGATGGTTCCTGGGGTCCTGAGGATAAATTTGGTGATTTTGTGAT CACGATTAAAGGTCCTAATCTTCTATCCTTAACTTTAGCAGGGTATATGCATAGAGCGAATTATATGCTGCTAGATGTTTCATCTTTGGTAGAAGCTAGT ATTGGTTATCGGATGAAAAGTTGTAGCCATGGTTGCAGAAGCAATTGGTATAGTGCACATCGCAGCGTGTTGCATGACCTACTTGAAAAATTACAGCATG TTGAGAAACTTACAATTGGAACTTGGTGTCTTCAGGTTCTATCTATATCAGAGGTGAAGGGTCTGTCTTCTCCAACTTCAGCATGCAAGTATCTAACACT GAACAAGAAGATCAACAAATGGGACCTTCCTGGGATTGCAAGCTTGCTACAAAGTTCGCCTAATCTGCAGAAATTAACTATCAACTTGATGCCCTCCAAC AATTTTGAGTTTGAGCTTGACAGGTCTTTTTATAAATATTATAGTTTTGATGGAGAGGAATACTGGAGTTTATATAATCAGAGGATTTTCAAATGTTTAG TGCTGCATCTCAAGAGTGTGGAGATTTTTGGATTTGACACAAGTTGTTCAAGTTTGAAACTTGTAGTTGATCAATGGGTGCAGTTTCTGCTCAAGAATGC CAAGGTACTGGAGAAGATGATTATACATGCACAGAGAGATGATGTAAATCGCACTTGGATGTCTGTTGAGGCACAGGAATTAATGGAATTACTTGAACTG ACCCAAGCATTCTTGTCCTACCCTAGAGCTTCACCAAATGCAAAGGTTATGTTAGAAAGTTGCTTTAAGTAA
AA sequence Show only first row Show all	>Potri.001G322900.1 pacid=42792282 polypeptide=Potri.001G322900.1.p locus=Potri.001G322900 ID=Potri.001G322900.1.v4.1 annot-version=v4.1 MRQPSESSVNATLWDSTTFYRTRNLKNNPLKRPRSCQNKECQKVDRISNLPDPIIQHILSFLPADDAIKTCILSKRWDSIWTLVPNLIFRRECSCSQEAE NFAVFVDKALMHYCSPKVKKFLVEFEFTECFKAQVDSWVDFAVRLKVEELCLEFHREIADDPDYYYLPNFLYSNIPAEKLSLRFCALSPNKLKQVSWMSL KVLSISYSWLSNEMIKNIFLGCSLLEYLKLNQCCGFDQINTNFSSSLKDLVVDGSWGPEDKFGDFVITIKGPNLLSLTLAGYMHRANYMLLDVSSLVEAS IGYRMKSCSHGCRSNWYSAHRSVLHDLLEKLQHVEKLTIGTWCLQVLSISEVKGLSSPTSACKYLTLNKKINKWDLPGIASLLQSSPNLQKLTINLMPSN NFEFELDRSFYKYYSFDGEEYWSLYNQRIFKCLVLHLKSVEIFGFDTSCSSLKLVVDQWVQFLLKNAKVLEKMIIHAQRDDVNRTWMSVEAQELMELLEL TQAFLSYPRASPNAKVMLESCFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18150			RNI-like superfamily protein (...		Potri.001G322900 [exp]	0	1
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Potri.001G170100 [exp]	5.74	0.8123
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.018G085200 [exp]	8.60	0.8166	RCSTG.1
AT1G75420			UDP-Glycosyltransferase superf...		Potri.005G118800 [exp]	13.96	0.8029
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	21.16	0.8117
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	36.66	0.7706
AT1G71080			RNA polymerase II transcriptio...		Potri.004G092200 [exp]	37.22	0.7666
AT2G31130			unknown protein		Potri.019G089900 [exp]	46.30	0.7474
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.002G212800 [exp]	53.69	0.7692
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Potri.003G102700 [exp]	54.07	0.7470
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	54.19	0.6983

Compare expression of checked genes

Potri.001G322900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.