Plant FIBer expression Database

Potri.001G323000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G061400
[exp]
100 / 6e-26 AT1G12830 / unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09649 CHZ Histone chaperone domain CHZ
Representative CDS sequence
>Potri.001G323000.2 pacid=42789608 polypeptide=Potri.001G323000.2.p locus=Potri.001G323000 ID=Potri.001G323000.2.v4.1 annot-version=v4.1
ATGGCAGAAACCGAAACCCAAAACGAACCCACATTACCCACAAAACGCAAACTCGATGACGACCCAATTCCTGAAAACGATCAAGAACAAGATAATCACT
ACAACAAATCGCAAAAAATCGACTCACTCTCCAACAATTCACCAATCATCCAGGAGAAACTCACTGAGAACTCGCGAACTCTAGAACCTTCAATCGATAG
CCAAAACGACAACGTACAAGAAGGAGAAGATGAAGATGGTAATCACTCCAACAAATCGCAAAAAATCGATTCACTCGCCAACAATTCACCAGTCATCCGA
GAGAAACTCACTGAGAACTCGCAAACTCTAGAACCTTCAATCGATAACCAAAACGACACCGTACAAGAAGGAGAAGATGAAGATGAAGATGAAGACGAAG
ACGAAGATGGTGAGGAAGAAGATGGTGATTATGAGGATGAAGAAGAGAACAGGGAGGAAGCGGTGGTGGACAGGAAAGGAAAAGGGATATTGATTGAAGA
AGGAGACGAAGACGACGACGACGACGGGAGTGAATTAGAGGGTGGCGATGATAGTGAGGAGGCAGAGGAGGATGATCCATTGGCTGAAGTTGATTTGGAT
AACATTTTACCATCGAGGACGCGAAGAAAAGTTGTGCATCCTGGAGTTTATATTGCTGCTTCTGCTGATGATGATGATGACAGTGATGCGTGA
AA sequence
>Potri.001G323000.2 pacid=42789608 polypeptide=Potri.001G323000.2.p locus=Potri.001G323000 ID=Potri.001G323000.2.v4.1 annot-version=v4.1
MAETETQNEPTLPTKRKLDDDPIPENDQEQDNHYNKSQKIDSLSNNSPIIQEKLTENSRTLEPSIDSQNDNVQEGEDEDGNHSNKSQKIDSLANNSPVIR
EKLTENSQTLEPSIDNQNDTVQEGEDEDEDEDEDEDGEEEDGDYEDEEENREEAVVDRKGKGILIEEGDEDDDDDGSELEGGDDSEEAEEDDPLAEVDLD
NILPSRTRRKVVHPGVYIAASADDDDDSDA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12830 unknown protein Potri.001G323000
[exp]
0 1
AT3G04800 ATTIM23-3 translocase inner membrane sub... Potri.013G039200
[exp]
1.73 0.9074
AT3G06790 plastid developmental protein ... Potri.010G007200
[exp]
2.00 0.8857
AT1G17530 ATTIM23-1 translocase of inner mitochond... Potri.003G044100
[exp]
2.00 0.8987 Pt-ATTIM23.1
AT3G53940 Mitochondrial substrate carrie... Potri.006G091900
[exp]
6.00 0.8671
AT3G55730 MYB ATMYB109 myb domain protein 109 (.1) Potri.008G062700
[exp]
8.24 0.8558
AT4G10620 P-loop containing nucleoside t... Potri.001G010400
[exp]
9.64 0.8949
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Potri.014G135600
[exp]
10.39 0.8697
AT1G73840 ESP1 ENHANCED SILENCING PHENOTYPE 1... Potri.012G056200
[exp]
11.53 0.8719
AT1G27090 glycine-rich protein (.1) Potri.010G034900
[exp]
11.83 0.8638
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
13.78 0.8839

Potri.001G323000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.