Plant FIBer expression Database

Potri.001G323200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12734 CYSTM Cysteine-rich TM module stress tolerance
Representative CDS sequence
>Potri.001G323200.1 pacid=42792975 polypeptide=Potri.001G323200.1.p locus=Potri.001G323200 ID=Potri.001G323200.1.v4.1 annot-version=v4.1
ATGAGTTACCAAAAAGCCCCTCATCAACCCTACCCTCCTTCAGGGTACTCACCACCTTACCCACCACCAGGGTACCCACCAACAACACCACCGTACGGAG
GGTACCCACCAACAACACCACCGTACGGAGGGTACCCACCGCCTGGAGCACCACCGCCAGGGTACTCTGGATACCCACCACCGGGGCCACCTCGTGGGTA
CCAAGGGTATTTCGCTGAAGGGTATCCACCACCACCACCGCCTCCAGGTCCGCAACAGTACCAAGAGTGTTATCACTATGAACATCATCATTACCAGGAT
GATGGTTGCTCCTCGTTTTTACGTGGTTGTTTGGCCGCGCTATGTTGCTGTTGTGTGTTGGAGGAATGCTGCTTCTAA
AA sequence
>Potri.001G323200.1 pacid=42792975 polypeptide=Potri.001G323200.1.p locus=Potri.001G323200 ID=Potri.001G323200.1.v4.1 annot-version=v4.1
MSYQKAPHQPYPPSGYSPPYPPPGYPPTTPPYGGYPPTTPPYGGYPPPGAPPPGYSGYPPPGPPRGYQGYFAEGYPPPPPPPGPQQYQECYHYEHHHYQD
DGCSSFLRGCLAALCCCCVLEECCF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G323200
[exp]
0 1
AT1G17080 Ribosomal protein L18ae family... Potri.001G380200
[exp]
1.73 0.8686
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.016G030900
[exp]
3.00 0.8447
AT3G47300 SELT SELT-like protein precursor (.... Potri.009G047000
[exp]
3.60 0.8389
AT5G53330 Ubiquitin-associated/translati... Potri.015G023600
[exp]
3.74 0.8802
AT1G68140 Protein of unknown function (D... Potri.001G208800
[exp]
6.16 0.8841
AT5G49480 ACP1, ATCP1 Ca2+-binding protein 1, Ca2+-b... Potri.008G103900
[exp]
8.00 0.7990 Pt-CP1.2
AT4G20330 Transcription initiation facto... Potri.001G107500
[exp]
8.36 0.8384
AT4G17960 unknown protein Potri.001G143600
[exp]
14.69 0.8045
AT1G16840 unknown protein Potri.010G252800
[exp]
14.83 0.7830
AT5G46720 AIG2-like (avirulence induced ... Potri.003G092600
[exp]
15.16 0.8424

Potri.001G323200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.