Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14030 214 / 5e-71 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061900 [exp] 249 / 1e-84 AT5G14030 210 / 6e-69 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031996 [exp] 225 / 2e-75 AT5G14030 263 / 1e-90 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10035166 [exp] 223 / 9e-75 AT5G14030 264 / 7e-91 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012565 [exp] 214 / 5e-71 AT5G14030 254 / 5e-87 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10041525 [exp] 208 / 5e-67 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF05753 [poplar] [flax] TRAP_beta Translocon-associated protein beta (TRAPB)
Representative CDS sequence Show only first row Show all	>Potri.001G323400.4 pacid=42793750 polypeptide=Potri.001G323400.4.p locus=Potri.001G323400 ID=Potri.001G323400.4.v4.1 annot-version=v4.1 ATGGCGAATCAAATAACAACAAAACCGTTATTCACTCTCGTACTATCACTCCTATTGGTATCCTCATCAATCGCTAGCTCCGATGTTCCCTTCATCGTCG CTCACAAGAAAGCCACTCTCAGCAGCCTCAAATCCGGAGCTGAGCGCGTCTCCGTCTCCATTGATATTTACAATCAAGGATCCTCGACTGCATATGATAT AACTCTTGTTGATGATCACTGGCCTCAAGATATGTTTAATGTCGTCAGTGGCAACACTTCACAGTCATGGGAAAGACTTCATGCTGGTGGTCTTCTGTCA CACTCTTTTGAATTGGACGGCAAAGTGAAAGGATTGTTTTTGGGCTCTCCAGCTGTCATTACATTCCGCATCCCCACAAAGGCTGCCTTGCAGGAGGCAT ACTCAACTCCCATTCTGCCTCTTGATGTCCTTGCAGACAAACCACCAGTGCAGAAGCTCGAGTGGGCAAAGAAGCTGTTGGTTAAGTATGGGTCTCTAAT TTCTGTGATCTCCATTGTGGTTCTGTTCGTGTACTTGCTCGTTACCCCATCCAAATCCGGTGCTGCAAAATCAGGCAAGAAGAGACGTTAA
AA sequence Show only first row Show all	>Potri.001G323400.4 pacid=42793750 polypeptide=Potri.001G323400.4.p locus=Potri.001G323400 ID=Potri.001G323400.4.v4.1 annot-version=v4.1 MANQITTKPLFTLVLSLLLVSSSIASSDVPFIVAHKKATLSSLKSGAERVSVSIDIYNQGSSTAYDITLVDDHWPQDMFNVVSGNTSQSWERLHAGGLLS HSFELDGKVKGLFLGSPAVITFRIPTKAALQEAYSTPILPLDVLADKPPVQKLEWAKKLLVKYGSLISVISIVVLFVYLLVTPSKSGAAKSGKKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14030			translocon-associated protein ...		Potri.001G323400 [exp]	0	1
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	1.00	0.9636
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	2.00	0.9543
AT2G21160			Translocon-associated protein ...		Potri.009G129800 [exp]	2.23	0.9491
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	4.47	0.9403
AT3G44330			unknown protein		Potri.004G198200 [exp]	4.58	0.9472
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	5.19	0.9427
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.005G190901 [exp]	5.65	0.9428
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.015G141900 [exp]	5.74	0.9528
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	7.34	0.9306
AT3G12390			Nascent polypeptide-associated...		Potri.003G190800 [exp]	7.48	0.9495

Compare expression of checked genes

Potri.001G323400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.