Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33500 212 / 3e-64 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 140 / 8e-37 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 110 / 1e-27 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G48250 99 / 1e-22 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT4G15250 93 / 9e-21 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G07650 92 / 3e-20 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT1G68190 88 / 8e-19 CO B-box zinc finger family protein (.1) AT3G21880 85 / 6e-18 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT5G15840 77 / 4e-15 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 74 / 3e-14 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061800 [exp] 172 / 4e-48 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 162 / 6e-44 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 108 / 3e-26 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 108 / 6e-26 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 98 / 5e-22 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 91 / 1e-19 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 80 / 6e-16 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.006G267700 [exp] 77 / 4e-15 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.017G039301 [exp] 77 / 4e-15 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002578 [exp] 134 / 2e-34 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 129 / 2e-32 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 114 / 8e-28 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10035257 [exp] 88 / 9e-19 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10041096 [exp] 86 / 4e-18 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 83 / 4e-17 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 83 / 6e-17 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10034625 [exp] 82 / 3e-16 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10036419 [exp] 76 / 1e-14 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10026909 [exp] 72 / 1e-13 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G323500.2 pacid=42788478 polypeptide=Potri.001G323500.2.p locus=Potri.001G323500 ID=Potri.001G323500.2.v4.1 annot-version=v4.1 ATGATAATGGAGAAGTGTTTAAATTCTAAACAAAAGAAAGACTGTTTCTTGTTTCTACCGTGTGAATTTTGCAACTCAAAAGCAGCAATCTTGTATTGTA GAGCTGATTCTGCTAAGCTTTGTTTGCCATGTGACCAGCAAATTCACTCTTCAAATACTCTGTCTCTCAAGCATGTAAGGTCACAGATCTGTGACAATTG CAGAGCTGAACCTGCTTCAATTCATTGCTCAAATGATAATCTTTTTCTTTGTCAAGATTGTGATTGGGATTCCCATAACAGCAGTTTTTCTGTATCTTCC CTTCATAATAGAAATCCAGTTGAAGGGTTCATGGGTTGCCCTCCAGTTGTTGAGCTTGCTTCTTTGTTTGGGTTTGATTTCAAATCTGATTTTTTTGTGG ATTCTGATCCTGGGTCGTGTTCGTTTGAGCAAGAAGCGGTTAATTTTCAAGATTTTGCGGTTTCAAGTGATGATTTCTCTGTTTTGTCAAGTTCTGGGAA GAGTAGGCAAGAAGTGTATAAGCAGTTAGTAGAGATGGGAAAGAGGGGAATGGTGAGAGTGAATGGAGATGGAGCTGAATTGGGGCCTGACACACCACCG AGTAGATGTGCAGTGCAGTGGAATTTGGAGAGTCTTGAATTGGAGAATGGGGACGAAGAATTGTTGCACCAGCAAACGCCATTTACCTCTTTGCTTATGT TGCCAAATCATGTAGATGCAAGTGAGAATGACTGTGTATCTGATCTAGGTTTCATGTGGGATTGCAATTATACCCATCAAGGAGCTCAGGCATGGGATTT CCAACTTGGAACATCATTAGATTGTACAATACCTGGTCCACAAGAAGAAGGATATGATGTAAAGGATCCTGGTTTCATGGTCAAGAACTATGTCGACTTC ACTGAAGATGGTGCCTTCGCTACACAGAAAGTATTGGATGATGGTCATGTGACGAGCTGCTGCTCTTCAACGTGTGAGGATAACTTGTCAAAAAATAGTT GCTCCAACCAGCAATTGTCAAGGTACAAACCACCAACAGAAAATTGCAACAATACACCACTGCTAGGACTGTCTCCAGGATCCATGCCAGGTGAGCCTAA CGCACATATCCAGGTCATGGAGCAGCCTTCTCTCACTTGGTTTGAAACTCTAAATGAGGTGAGACAAAAGGGTGATGCGGGACTTTTTGCACAGAACAGA GGCAACGCCATGTTGCGGTACAGGGAAAAGAAGAAAAATCGAAGATATGATAAACGTATCCGTTATGAATCAAGGAAGGCTAGAGCTGATACGAGAAAGC GAGTGAAAGGGCGGTTCGTAAAGGCAATAGAAAATTAA
AA sequence Show only first row Show all	>Potri.001G323500.2 pacid=42788478 polypeptide=Potri.001G323500.2.p locus=Potri.001G323500 ID=Potri.001G323500.2.v4.1 annot-version=v4.1 MIMEKCLNSKQKKDCFLFLPCEFCNSKAAILYCRADSAKLCLPCDQQIHSSNTLSLKHVRSQICDNCRAEPASIHCSNDNLFLCQDCDWDSHNSSFSVSS LHNRNPVEGFMGCPPVVELASLFGFDFKSDFFVDSDPGSCSFEQEAVNFQDFAVSSDDFSVLSSSGKSRQEVYKQLVEMGKRGMVRVNGDGAELGPDTPP SRCAVQWNLESLELENGDEELLHQQTPFTSLLMLPNHVDASENDCVSDLGFMWDCNYTHQGAQAWDFQLGTSLDCTIPGPQEEGYDVKDPGFMVKNYVDF TEDGAFATQKVLDDGHVTSCCSSTCEDNLSKNSCSNQQLSRYKPPTENCNNTPLLGLSPGSMPGEPNAHIQVMEQPSLTWFETLNEVRQKGDAGLFAQNR GNAMLRYREKKKNRRYDKRIRYESRKARADTRKRVKGRFVKAIEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G323500 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.009G010200 [exp]	1.41	0.9769
AT3G02645			Plant protein of unknown funct...		Potri.009G085300 [exp]	1.73	0.9691
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	2.44	0.9708
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.004G026600 [exp]	5.29	0.9555
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	6.00	0.9548
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012600 [exp]	11.13	0.9613
AT5G12340			unknown protein		Potri.009G071100 [exp]	12.36	0.9449
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	14.89	0.9565
AT5G37490			ARM repeat superfamily protein...		Potri.012G042600 [exp]	18.43	0.9574
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.010G187800 [exp]	19.67	0.9270	Pt-FAD3.3

Compare expression of checked genes

Potri.001G323500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.