Plant FIBer expression Database

Potri.001G323600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14020 521 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
AT1G73390 328 / 1e-109 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
AT1G17940 305 / 9e-101 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G062000
[exp]
741 / 0 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Potri.004G067400
[exp]
320 / 4e-106 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Potri.017G154200
[exp]
300 / 6e-99 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041527
[exp]
627 / 0 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10035167
[exp]
619 / 0 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10031997
[exp]
618 / 0 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10012563
[exp]
617 / 0 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1)
Lus10031881
[exp]
341 / 3e-114 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10042289
[exp]
333 / 3e-111 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10031313
[exp]
330 / 7e-110 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Lus10026368
[exp]
291 / 1e-94 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03097 BRO1 BRO1-like domain
Representative CDS sequence
>Potri.001G323600.2 pacid=42791397 polypeptide=Potri.001G323600.2.p locus=Potri.001G323600 ID=Potri.001G323600.2.v4.1 annot-version=v4.1
ATGGGGTGCAGTGCTTCTATGTACGCAGTCGGGAAGAGAAAGAAGACATGCATACCAGAAGTGGTGGTGTACGTTCCTTCTATGAGAATACCAGCACAAT
CTGATCTTCAAAGGCCACTTAGAGGGTTAATTCTTCAAGATCTTGTTGATAGGTTGGCCTGTCTTCGCAATCAGATTGTGTTAGTGGCTGAGGATACTGG
TGGATCTGCTGTAGCTGAACTGAGGAGGGCATTGGAAGAGTACTTGCCTCTTCTTATTGGGCTCACCAAGAAAGAACATGGACTTGAGGGCTTGGTGGAA
TTCAACTGGAAAAATCTGGAAGATGGCCGGCTGCAGGAAAACTCTGTGGCAAACTCCTGGTTTGAATTACTATCTGTCATTCACATGATAGCAATGCTTA
ATTTGTCGGAGGCTAACTCGTTGATGATCCCTAAGGATCACTCTGGTTCTGGCATTAGGGTTGTATCTTCAGATTGTAAGAGGGATTCTGTTGATTTACT
GCTTAAGGCATCAGGATGCTTGGTATTCTGCGTCCGTGAAATCATGGCTCATTTACCACCCGATATCAAGAAAAAGTTTTCAGAAGTTTTTCAGGATGGT
GTCCTGGAGGCTATATCAATTCAAGCACTAGGCCAGGGAACTGAAATTCAGCTTGGTTTAGCTGTCGAAAGTCAAAAGGCTTCATTGTCGGTGAAGAGGA
GGTTGGCATGTGAGCAGCTGATCTACTTCGGTCAGGCTTATCACTGCTTGTCAGAGTCTTCTAACACGAGTAATATGCATGGAAAGAAGCATCTCTGTTT
CATCAAGTGGAAGTTCCTTGAAGCAAAGGCTGCAGCTTACTACTACCATGGTCTGATCCTTGACAAGGGCACTGAACCAGCCTGTCATGTTACTGCTGTA
TGCTGTTTTCTAGCTGCAGATGGACTTTTGTCAGAGAGCAAGAAGGCCTGCTTAACTTTTTGCCTCACTACTCCTGTTACCAGATCCCCTCCACTTTGGG
GTGCAATGAAGCACTTGCATCAGAAAATTCCTGAAGTTGCAGCAAGGAAGTCTCAGATGTATGGCTACCTCTTGGAAGAAGAGAAGGCTCTACAAGCACC
GCCTGACCTACCAGATTTCCAATTGTCATTAGCACCTGATGACTATTTATTGCCTGAAATAGATTCAGCATGGGATTGCAACAAGTGTGAAATCCAGAGC
CAGCCCTTAAAAGAGCACCCCAAAGATTCTGAAGATGACACTGAAACTGAATGA
AA sequence
>Potri.001G323600.2 pacid=42791397 polypeptide=Potri.001G323600.2.p locus=Potri.001G323600 ID=Potri.001G323600.2.v4.1 annot-version=v4.1
MGCSASMYAVGKRKKTCIPEVVVYVPSMRIPAQSDLQRPLRGLILQDLVDRLACLRNQIVLVAEDTGGSAVAELRRALEEYLPLLIGLTKKEHGLEGLVE
FNWKNLEDGRLQENSVANSWFELLSVIHMIAMLNLSEANSLMIPKDHSGSGIRVVSSDCKRDSVDLLLKASGCLVFCVREIMAHLPPDIKKKFSEVFQDG
VLEAISIQALGQGTEIQLGLAVESQKASLSVKRRLACEQLIYFGQAYHCLSESSNTSNMHGKKHLCFIKWKFLEAKAAAYYYHGLILDKGTEPACHVTAV
CCFLAADGLLSESKKACLTFCLTTPVTRSPPLWGAMKHLHQKIPEVAARKSQMYGYLLEEEKALQAPPDLPDFQLSLAPDDYLLPEIDSAWDCNKCEIQS
QPLKEHPKDSEDDTETE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14020 Endosomal targeting BRO1-like ... Potri.001G323600
[exp]
0 1
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.004G149000
[exp]
4.69 0.9373 Pt-AOS.4,CYP74C7-1
Potri.017G102200
[exp]
7.74 0.9187
AT5G39820 NAC ANAC094 NAC domain containing protein ... Potri.004G126901
[exp]
9.16 0.9175
Potri.010G135150
[exp]
10.58 0.8895
AT5G01750 Protein of unknown function (D... Potri.016G131600
[exp]
12.72 0.9037
Potri.002G012433
[exp]
13.41 0.9080
AT5G20260 Exostosin family protein (.1) Potri.006G064600
[exp]
17.43 0.9004
AT5G60520 Late embryogenesis abundant (L... Potri.009G012600
[exp]
20.56 0.8989
AT1G53130 GRI GRIM REAPER, Stigma-specific S... Potri.001G399200
[exp]
22.22 0.8926
AT5G44640 BGLU13 beta glucosidase 13 (.1) Potri.001G015100
[exp]
23.06 0.8921 Pt-L1.1

Potri.001G323600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.