Plant FIBer expression Database

Potri.001G323800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41130 686 / 0 Esterase/lipase/thioesterase family protein (.1.2)
AT5G41120 684 / 0 Esterase/lipase/thioesterase family protein (.1)
AT3G26840 667 / 0 Esterase/lipase/thioesterase family protein (.1)
AT3G02030 650 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1)
AT1G54570 640 / 0 Esterase/lipase/thioesterase family protein (.1)
AT3G26820 572 / 0 Esterase/lipase/thioesterase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G324200
[exp]
1004 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.001G324000
[exp]
960 / 0 AT5G41130 688 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Potri.017G062200
[exp]
955 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.001G324400
[exp]
921 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Potri.005G046600
[exp]
646 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.005G046700
[exp]
645 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.013G033101
[exp]
644 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.013G033300
[exp]
642 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Potri.013G033000
[exp]
633 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041529
[exp]
768 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Lus10012560
[exp]
766 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Lus10018998
[exp]
630 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Lus10033848
[exp]
589 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF03982 DAGAT Diacylglycerol acyltransferase
CL0028 AB_hydrolase PF12146 Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence
>Potri.001G323800.2 pacid=42793285 polypeptide=Potri.001G323800.2.p locus=Potri.001G323800 ID=Potri.001G323800.2.v4.1 annot-version=v4.1
ATGGCTGTAAATGGAGCTTGTTTTTTCGCGGCCGGTTTTCCAACGACGGTCCGTTGTTGTGCAAAACCATCGTCGTCCGGTAAATTCAAACGGAATCCAG
CGGTGGCAAATACGATTCGTCGTTTTGCTGTTTCAACAGAGGAATCGATAACAACTGAAACGACAACGGATTTTGTAGAGGATGGAAGGTTGAAGAAGAA
GGTGGTGGATGGAGAAAAGATGAACCCATACGTCTTGGAGTTGGAGAAAACTGAATTGGAGTATAAAAGTAGTAGAAAAGGTTTGAATGATTATTTTGAG
GAATCCAGAAATTTCATCAAATCAAGCGGCGGCGGTGTTGGTGGTCCGCCTCGGTGGTTCTCTCCTTTGGACTGTGGGTCGCGCTTGGATAACTCTCCTC
TCCTCCTCTATTTGCCTGGGATTGATGGCGTCGGCCTAGGCCTTAGCACGCATCATTCAACTCTTGGAAAGATTTTCGACATATGGTGCTTGCATATTCC
AGTCAAGGACAGAACATCTTTTATAGGACTAGTGAAGCTGGTTGAGAGAACAGTAAGATCGGAGAATCACCGTTCACCTAGTAAGCCTATATATCTCGTC
GGAGAGTCTCTTGGAGCCTGCCTTGCGCTTGCTGTGGCGGCTCGCAACCCCGATATTGATCTCGTCCTTGTTTTGGTTAATCCAGCAACATGTTTTGAGA
AGTCACAACTGCAGCGTCTTATGCCTTTGTTAGAGATCATGCCCATCCAACACCAGTTCGGCCTGCCTTATATTCTGAGCTTAATGACAGGTGATCCTTT
GAAGATGGTAATCGATAATGCGAGAAAGGGAGTTCCTCTACTGGAAATAGTTGAAGGATTATCACAAGATGCTGTCGTGATTCCATCTAACCTCAATGTT
TTAGCTGCTATCTTACCTAGAGAAACACTTCTATGGAAGCTAAATATGTTGAAAGTGGCTTCAAAATTTGCAAATTCACACCTCCATGCTGTAAAAGCTC
AAACACTTGTACTTTCTAGCGGAAGGGATCAGTTGCTACCAAGTGAAGAGGAAGGTCAAAGACTTAATCGTGTTCTCCCAAAGTGTCAGAATCGCAGTTA
TAGTGGAAGTGGTCATTTTCTTCTCCTGGAAGATGTCTTTGATTTGGCAACACTCATCAAAGGTTCTGCTTTTTATCGTCGGGGAGCACACCAAGATTAT
GTTTCGGATTATGTACCACCAACTCCTTTAGAATTTAGACAAATATACGAACCAAACAGGTTGTTTCTGCTTGCCATAAGTTCTGTCATGCTCTCAACCT
TAGAAGATGGGAAGATAGTGAGGGGCCTTGCAGGAATCCCTTCGGAGGGACCTGTTTTGTTCGTTGGTTATCACATGTTAATGGGATTTGAGCTGGCCCC
GATGGTATCCAATTTTTTGTTGGAAAGAAATATTTTTCTGAGAGGTTTAGCTCATCCAGTTCTATTCATAAGAACCAAAAAAGAGCGATTGCTACCTCCA
TTGTCACAGTTTGACACATTTAGAGCAATGGGAGCAGTTCCTGTTTCAGGAACCAATTTATACAAACTTCTAGCTTCAAAGGCTCATGTGTTATTGTACC
CAGGAGGTGGCCGTGAGGCCTCTCATCGCAAGGGTGAACAATACAAGTTGTTCTGGCCAGAACAGTCTGAGTTTGTTAGGATGGCAGCTAGGTTCGGAGC
AAAAATCGTGCCATTTGGTGTTGTTGGAGAAGATGATTTTGGTGAAGTTGTTTTTGACTATGATGATCAAATGAGGATTCCTTTCCTTAGGGATTACATA
GAAGCAGTAACAGATGAACTGGGCGTGAGAGTGAGGACTGAAGAAGATGGTGAGGTGGGAAATCAAAATATGCATCGTTTGGGAATTTTACCAAAATTTC
CAGGCAGGTTCTATTACTACTTTGGAAAACCGATAGAAACAGAAGGGAGGAGGCATGAATTAAGAGACAGGGAGCAAGCTCATGAATTATACCTGCAAAT
CAAATCTGAGGTGGAGAAGTGCATTGGTTTTTTGAAGGAGAAGAGAGAGACCGATCCTTACAGGAACATGTTGGCCCGACTATCTTACCAGGCCACGAAC
GGCTCTACTTCTCAAGTTCCAACATTTGATATTTGA
AA sequence
>Potri.001G323800.2 pacid=42793285 polypeptide=Potri.001G323800.2.p locus=Potri.001G323800 ID=Potri.001G323800.2.v4.1 annot-version=v4.1
MAVNGACFFAAGFPTTVRCCAKPSSSGKFKRNPAVANTIRRFAVSTEESITTETTTDFVEDGRLKKKVVDGEKMNPYVLELEKTELEYKSSRKGLNDYFE
ESRNFIKSSGGGVGGPPRWFSPLDCGSRLDNSPLLLYLPGIDGVGLGLSTHHSTLGKIFDIWCLHIPVKDRTSFIGLVKLVERTVRSENHRSPSKPIYLV
GESLGACLALAVAARNPDIDLVLVLVNPATCFEKSQLQRLMPLLEIMPIQHQFGLPYILSLMTGDPLKMVIDNARKGVPLLEIVEGLSQDAVVIPSNLNV
LAAILPRETLLWKLNMLKVASKFANSHLHAVKAQTLVLSSGRDQLLPSEEEGQRLNRVLPKCQNRSYSGSGHFLLLEDVFDLATLIKGSAFYRRGAHQDY
VSDYVPPTPLEFRQIYEPNRLFLLAISSVMLSTLEDGKIVRGLAGIPSEGPVLFVGYHMLMGFELAPMVSNFLLERNIFLRGLAHPVLFIRTKKERLLPP
LSQFDTFRAMGAVPVSGTNLYKLLASKAHVLLYPGGGREASHRKGEQYKLFWPEQSEFVRMAARFGAKIVPFGVVGEDDFGEVVFDYDDQMRIPFLRDYI
EAVTDELGVRVRTEEDGEVGNQNMHRLGILPKFPGRFYYYFGKPIETEGRRHELRDREQAHELYLQIKSEVEKCIGFLKEKRETDPYRNMLARLSYQATN
GSTSQVPTFDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G41130 Esterase/lipase/thioesterase f... Potri.001G323800
[exp]
0 1
Potri.001G310801
[exp]
1.41 0.9373
Potri.004G206625
[exp]
3.46 0.9016
Potri.006G239650
[exp]
4.24 0.9205
AT5G07670 RNI-like superfamily protein (... Potri.014G059100
[exp]
6.70 0.8789
AT5G51280 DEAD-box protein abstrakt, put... Potri.004G224000
[exp]
7.07 0.8860
Potri.005G130500
[exp]
7.21 0.8805
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
12.00 0.8993 ELF5.2
Potri.006G033100
[exp]
12.72 0.8726
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.010G186200
[exp]
12.96 0.8810
AT3G50910 unknown protein Potri.005G120600
[exp]
13.67 0.8816

Potri.001G323800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.