Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41120 734 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41130 724 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT3G26840 668 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G02030 652 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT1G54570 630 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G26820 586 / 0 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323800 [exp] 988 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.001G324000 [exp] 948 / 0 AT5G41130 688 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.017G062200 [exp] 939 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324400 [exp] 936 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.005G046700 [exp] 667 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 667 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 665 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 661 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 646 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041529 [exp] 800 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10012560 [exp] 796 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10018998 [exp] 650 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10033848 [exp] 602 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF03982 [poplar] [flax] DAGAT Diacylglycerol acyltransferase CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.001G324200.1 pacid=42793163 polypeptide=Potri.001G324200.1.p locus=Potri.001G324200 ID=Potri.001G324200.1.v4.1 annot-version=v4.1 ATGTCAACCGTCACCACCGTAGGTAGTTTTTTCCCGTCAGTCCGTTGCTGTGCACCGCCGTCCACATCGCCTTTGTCAAACGGTAGATTGAAACTGAACC ATGTATCAAATACGGCTCGTCGTTTGGCTGTTTCAACAGAGCAAGCGATATCAACTGAAACGACAACGGAGAGAAATGAAACGACGATGAGGAATCATGT AAGCAATGGAAGGTTGAAGGAGAGTGAAGAAGGAGAAGGAATGAAAGAGAAGCAAAAGAATCCGTATGCACTGGAGTTAGAGAAAACTGAGATGGAGTTG AGAAGTAGTAGAAAAAGCCTGGAGGATTATTTTGAGGAGTCGAAGAATTTTATTGCTAAATCAGACGGTGGTGGTGGTGGCCCGCCACGGTGGTTCTCTC CGTTGGAGTGTGGATCCCGGTTGGATAACTCTCCTCTTCTTCTATTTTTGCCTGGGATTGATGGCATTGGACTAGGACTTAGCAAGCAGCACAATACTCT GGGGAAGATTTTCGACATATGGTGCTTGCATATTCCAGTTAAGGACAGAACATCCTTTCTAGGCCTAGTGAAGCTTATTGAAAGGACAGTAAGATCAGAG AGTTACTGTTTCCCAAATAGACCTATATATCTTGCTGGAGAATCTCTTGGAGCATGTCTTGCCCTGGCTGTCGCAGCTCGTAACCCTGATGTTGATCTTG TACTTGTTTTGGCTAATCCAGCAACGTCTTTTGAGAAGTCACAGCTGCAGCCTCTAATACCCTTATTGGAAGTCTTACCCTTCCAGCACCAGCTTACCAT TCCTTATATGTTGAGCTTGATGACAGGTGATTCTTTGAGGATGGCCATGGACAATGCAGTGAAGGGATTTCCTCTAGAACAAACAATTGGAGGATTATCA CAAGATTTGGTTGCAATGTCATCTTACCTCAACGCTCTGGCTAATATATTACCTAGAGAAACGCTTCTTTGGAAGCTACAGATGCTTAAAACAGCTTCGG CATATGCCAATTCACGCCTCCATGCTGTGAAATCTCAAACACTTGTCCTTTCTAGTGGAAGAGATCAGCTTCTTCCAAGTGAAGAAGAAGGTCAAAGGCT TTATGTTGCACTCCCAAAATGTGAGATTCGCAAGTTTAACGACAGTGGTCATTTCCTCTTCTTGGAACATGATGTTGATTTGGCAAATATCATCAAGGGA GCTAGTTGCTATCGTCGTGGAAAGTATCTTGACTACATATCAGATTACATACCACCAACCCCTCTTGAATTCAAAAAATTATATGATTCGAACAGATTGT TTGTGCTGGCCACAAGTCCTGTGATGCTCTCATATTTTCAAGATGGGAAGATTGTGAGGGGCCTTGCTGGAGTTCCTTCAGAAGGACCAGTATTGTATGT TGGTTATCACATGCTAATGGGATTTGAAGTGATCCCATTGATATCCAACTTTTTGTTGGAAAGAAATATTCTTATAAGAGGGATAACACATCCAATGTTG TACGTGAAATTGAAGAAAGAGGGGATGATGCCTCCATTGCAACAATTCGATGTGGTCAGAACTATGGGTGCAGTTCCTGTTTCAGGAAGCAATTTCTACA AACTTATGTCTTCAAAGGCTCATGCACTATTATACCCAGGAGGAATGCGGGAGGCCTATCATCGGAAGGGTGAAGAATACAAGTTATTCTGGCCAGAAAA GTCAGAGTTTGTCAGAATGGCATCTAGGTTTGGAGCCAAAATTGTGCCATTTGGTGTTGTTGGAGAGGATGATTTTGGAGAAGTGGTATTTGATTATGAT GATCAAATGAAGATTCCTTTCCTTAGGGATTACATAAAAGGGTTATCAGAAGAGGTTGTGAGTTTGAGGACTGAAGCGGATGGTGAGGTGGGACAACAAG ATCTGCACCAGGTAGGAATTGTACCAAAATTCCCAGGCAGGTTCTATTACTATTTTGGGAAACCAATTGAAACAGAAGGGAGGAAGCAGGAATTAAGAGA CCGGGAAAAAGCTCATGAATTATACTTGCATGTCAAATCTGAGGTGGAAAACTGCATTGCTTTTCTGAAGGAGAAAAGAGAAAGTGATCCTTACAGGAAT ATATTGGCCCGGTTGGCTTACCAGGCCTCTCATGGCTTTGATGCTGAAGTTCCAACATTTGATATTTGA
AA sequence Show only first row Show all	>Potri.001G324200.1 pacid=42793163 polypeptide=Potri.001G324200.1.p locus=Potri.001G324200 ID=Potri.001G324200.1.v4.1 annot-version=v4.1 MSTVTTVGSFFPSVRCCAPPSTSPLSNGRLKLNHVSNTARRLAVSTEQAISTETTTERNETTMRNHVSNGRLKESEEGEGMKEKQKNPYALELEKTEMEL RSSRKSLEDYFEESKNFIAKSDGGGGGPPRWFSPLECGSRLDNSPLLLFLPGIDGIGLGLSKQHNTLGKIFDIWCLHIPVKDRTSFLGLVKLIERTVRSE SYCFPNRPIYLAGESLGACLALAVAARNPDVDLVLVLANPATSFEKSQLQPLIPLLEVLPFQHQLTIPYMLSLMTGDSLRMAMDNAVKGFPLEQTIGGLS QDLVAMSSYLNALANILPRETLLWKLQMLKTASAYANSRLHAVKSQTLVLSSGRDQLLPSEEEGQRLYVALPKCEIRKFNDSGHFLFLEHDVDLANIIKG ASCYRRGKYLDYISDYIPPTPLEFKKLYDSNRLFVLATSPVMLSYFQDGKIVRGLAGVPSEGPVLYVGYHMLMGFEVIPLISNFLLERNILIRGITHPML YVKLKKEGMMPPLQQFDVVRTMGAVPVSGSNFYKLMSSKAHALLYPGGMREAYHRKGEEYKLFWPEKSEFVRMASRFGAKIVPFGVVGEDDFGEVVFDYD DQMKIPFLRDYIKGLSEEVVSLRTEADGEVGQQDLHQVGIVPKFPGRFYYYFGKPIETEGRKQELRDREKAHELYLHVKSEVENCIAFLKEKRESDPYRN ILARLAYQASHGFDAEVPTFDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41120			Esterase/lipase/thioesterase f...		Potri.001G324200 [exp]	0	1
					Potri.011G070400 [exp]	3.00	0.9476
AT2G46100			Nuclear transport factor 2 (NT...		Potri.002G162800 [exp]	8.30	0.9584
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.010G238300 [exp]	10.39	0.9097
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	11.04	0.9508
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	15.93	0.8845
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	16.94	0.9437
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	17.60	0.9455
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	17.60	0.9429
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	20.88	0.9469	RPOD1.1
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	23.66	0.9420	PLCYC4.2

Compare expression of checked genes

Potri.001G324200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.