Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41130 745 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT5G41120 734 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G26840 724 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G02030 692 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT1G54570 655 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G26820 618 / 0 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324200 [exp] 988 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324000 [exp] 967 / 0 AT5G41130 688 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.001G323800 [exp] 958 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.017G062200 [exp] 953 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 686 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046700 [exp] 685 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 683 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 678 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 668 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041529 [exp] 830 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10012560 [exp] 811 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10018998 [exp] 681 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10033848 [exp] 650 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF03982 [poplar] [flax] DAGAT Diacylglycerol acyltransferase CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.001G324400.1 pacid=42791499 polypeptide=Potri.001G324400.1.p locus=Potri.001G324400 ID=Potri.001G324400.1.v4.1 annot-version=v4.1 ATGGCGGCCACCGGTGGTTGTGTTGCCTTTTCCACGGTGGTTCGCTCCTGCCAAGTAACACCGTCACCATCATCCGGTAATTTGAGACCGAATCCGAGTC TAAGGCAATTTGCTGTTTCCAGCGAGAGTCAATTCACGAAGACAGTTAGAAAAAGTGAAACAAAAAGAACGACTAGTTTTGGAGAGAACGGGATTTTCAA GGAGAAACACAAAGAAGAAGCGAGGGAGGGAGTAACAAAAGAGAAACAAAAAAATCCTTACGAGCTGGGGTTAGAGAGAAATGAAAGTGATGAAGATAGG AGTAGAAAGAGCCTTAAAGATTACTTTGAGGAGTCAAAGGATTTGATCAGATCAGAAGGTGGTGGTGGTGGTGGTCCGCCTCGGTGGTTCTCTCCGTTAG ACTGTGGTTCCCGCCTGGACGATTCTCCTCTCCTCCTCTATTTGCCTGGGATAGATGGTGTTGGGCTAGGACTTATTATGCATCATCAATCTCTGGGAGA GATTTTCGACATATGGTGCTTGCATATTCCAGTTAAGGATAGAACATCATTTATTGACCTAGTGAAGTTGGTAGAACAAACAGTTAGATCAGAGAACTGT CATTCACCCAATAGACCCATATATCTTGTTGGAGAATCTCTTGGAGCATGCCTTGCATTAGCCGTTGCAGTTCGTAACCCTGATATTGATCTTTCACTTA TTTTGGCCAATCCAGGAACTTCTTTTGAGAAGTCACAGTTGCAACCTCTCATACATCTATTGGGAATCATACCCGTTCAGTACCAGCTTATCCTTTCTTA TATGCTGAGCTCCATGACAGGTGATCCTTTGAGGATGGCAATGGACAAGGTAATGAAGGGACTTCCTTTACAACAAACAGCCGAAGGATTATTGAAAGAT GTTGCTGCAATGTCATCATATGTCTATGTTCTAGCTAATATCTTACCCGAAGAAACACTTCTGTGGAAGCTAAAGATGCTTAAATCAGCTTCAGCATTTG CCAATTCACGCCTCCATGCTGTGAAAGCTCAAACACTGCTTCTCACCAGTGGTAGGGATCAGTTACTACCAAGTGAAGATGAAGGCAAAAGACTTCGCCG TGCACTTCCAAAATGTGAAATTCGTAGGTTTAATGACAACGGTCATTACCTCTTCTTGGAAGATGGAGTTGATTTGGTGACTGTCATCAAAGGTGCTAGT TTCTATCGCCGTGGGAAATGCCATGACTACGTTTTTGATTATATACCTCCAACCCCCTCTGAAATCAAAAATATATGTGAATCAAACAGGTTGTTTATGC GTGCTACCAGCCCTGTAATGCTGTCAACTTTAGAAGACGGGAAGATTGTGAAGGGCCTTGCAGGAATTCCTTCGGAGGGACCAGTCTTGTTCATTGGTTA TCACATGTTATTGGGATATGAATTGGTGCCAATGGTCATGAACCTTTTGTTGGAAAGAAACATTCTTATGAGAGGGATGGCACATCCAATGATGTTTACG AGAAAGAAAGAAGGTTATTTACCTGAATTATCAAGTTTTGACACATACAGAACAATGGGTGCAGTTCCTGTTTCTGGAACCAATTTGTACAAACTTCTAT CTTCGAAGGCCCATGTGCTACTGTACCCAGGAGGCCTGCGTGAGGCCTGTCATCGAAAGGGTGAACAATACAAGTTAATCTGGCCAGAGCAATCTGAGTT TGTTAGAATGGCAGCAAGGTTTGGAGCAAAAATTGTACCATTTGGTGTTGCTGGAGAAGATGATTTTGGTGAAATAGTTTTTGATTATGATGATCAAATG AAGATTCCTTTCCTTAAGGATTTTATTAAATCACTGTCGGAGGAGGCTGACACAGTGAGGACTGGATTGAATTCTGAGGTGAACCAAGATATTCATTCTC CGGTAGTCTTGCCAAAATTTCCAGGCAGGTTTTATTACTATTTTGGGAAACCAATTGAAACAGAAGGAAGGATGAGTGAATTAAGAGACAAGGACAATGC GCACGAGTTATACATGCAAGTCAAGTCTGAGGTGGAGAAATGCCTAGCTTTTTTGCAGGAGAAAAGAGAAAGTGATCCTTATAGAAATTTATTGGCTCGG CTAGCTTACCAGTCTACGCATGGGTTTGATTCCGAAGTTCCAACATTTGAACTTTGA
AA sequence Show only first row Show all	>Potri.001G324400.1 pacid=42791499 polypeptide=Potri.001G324400.1.p locus=Potri.001G324400 ID=Potri.001G324400.1.v4.1 annot-version=v4.1 MAATGGCVAFSTVVRSCQVTPSPSSGNLRPNPSLRQFAVSSESQFTKTVRKSETKRTTSFGENGIFKEKHKEEAREGVTKEKQKNPYELGLERNESDEDR SRKSLKDYFEESKDLIRSEGGGGGGPPRWFSPLDCGSRLDDSPLLLYLPGIDGVGLGLIMHHQSLGEIFDIWCLHIPVKDRTSFIDLVKLVEQTVRSENC HSPNRPIYLVGESLGACLALAVAVRNPDIDLSLILANPGTSFEKSQLQPLIHLLGIIPVQYQLILSYMLSSMTGDPLRMAMDKVMKGLPLQQTAEGLLKD VAAMSSYVYVLANILPEETLLWKLKMLKSASAFANSRLHAVKAQTLLLTSGRDQLLPSEDEGKRLRRALPKCEIRRFNDNGHYLFLEDGVDLVTVIKGAS FYRRGKCHDYVFDYIPPTPSEIKNICESNRLFMRATSPVMLSTLEDGKIVKGLAGIPSEGPVLFIGYHMLLGYELVPMVMNLLLERNILMRGMAHPMMFT RKKEGYLPELSSFDTYRTMGAVPVSGTNLYKLLSSKAHVLLYPGGLREACHRKGEQYKLIWPEQSEFVRMAARFGAKIVPFGVAGEDDFGEIVFDYDDQM KIPFLKDFIKSLSEEADTVRTGLNSEVNQDIHSPVVLPKFPGRFYYYFGKPIETEGRMSELRDKDNAHELYMQVKSEVEKCLAFLQEKRESDPYRNLLAR LAYQSTHGFDSEVPTFEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	6.16	0.8556
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	6.63	0.8685
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	7.41	0.8147
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123800 [exp]	8.30	0.7993	KUP10.3
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	10.24	0.8235
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	11.40	0.8136
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	12.96	0.8140	Pt-GLUR2.1
AT4G32250			Protein kinase superfamily pro...		Potri.018G026400 [exp]	13.26	0.8197
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	21.90	0.7878
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.004G103700 [exp]	22.84	0.7974

Compare expression of checked genes

Potri.001G324400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.