Plant FIBer expression Database

Potri.001G324700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26890 415 / 2e-135 unknown protein
AT5G41110 384 / 8e-124 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G103500
[exp]
430 / 1e-140 AT3G26890 231 / 2e-66 unknown protein
Potri.012G104200
[exp]
429 / 1e-140 AT5G41110 302 / 2e-93 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031999
[exp]
392 / 6e-127 AT3G26890 400 / 3e-131 unknown protein
Lus10035170
[exp]
379 / 1e-121 AT3G26890 388 / 1e-126 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13889 Chromosome_seg Chromosome segregation during meiosis
Representative CDS sequence
>Potri.001G324700.4 pacid=42787538 polypeptide=Potri.001G324700.4.p locus=Potri.001G324700 ID=Potri.001G324700.4.v4.1 annot-version=v4.1
ATGGGTTTGCCACAAGTTTCCTCTACTGATAGTGCTAATGAAGTTCCAGCAGCATCGTTGGGCACTTTTTTGCAAAGCCCGCCACGATATGCTGGCATAA
GTGGATTGGATGGAGGAAATATTGGCCGAACAGTTGGGCATACTAGGACTTCCTCATTAGGAGATTTCCAGGGGAAACCCTCCTTGGATCTTTTGAAATA
TTCGGAGAATTCATTTGAATTTGGAAGGGCAGTGGATGTTGTTTCCAATTTTCATGGGTTGAAAACTGGTTCTGTGGATGAAGTTGGTCGTTGTACTCCT
AAAAGTGGGAGGAATATTCCAATCCCTGCTTCTAGGATTGTGGGTTTTGAATCACATGGAATGAGTTTTTTAAATAATGGCTTTGAGATTCTTTCTGCTG
ATCATGTGTGTTCTTCTGCTGTTGATGGTGTCACGATTAATGAGGCTGAGTCAAGTGGATCACTTGTCAGGAAGCGGTTACTGTCATCACCTTTAAATGA
TATGCTTTCTGCAAAACAATTTTATGGTGAGTCTTTGGATATCAGCTGCAATACTTCTCGGATGAGTTGCCCTACTCATGCTGATCATTTCAAAAGTTCT
GCATCACATGACTACAAGAAAGCAAATGTTGGCAGAAAAATTCATATCAGTGTGCCATCTCGATCCTTATCTGGCTGCTGGGAACAAAAGAATGTGCCAT
GTGACGATAGTGCTAGAAGGTCTGTTTGTTTGACTGATGGTCCATTATTGGAAAAAAATGATGCACTCTCTTGCATTAATTGTTTTTACTCTCCTGGACA
CAATCATTACCTAGAGTCTAAGGTATCCTCCCAAAAGGGATTTTCATCTCCACTCTCTCTGTCTCCTCTAGGTCCAAAGTCTTGTGTAAGTATGAAAACT
GTAGGAGGATGCAGAGAGGTCAAGAGCCAATTTGAGGATTGCTATTTGAATTTAGAAAAAATAGGGCATTCATTTGACAGAAATGACTCGGGCATTAACT
TTGCTTCTGAAGAAGCAGAGTTCAGGATCTCAAGCAGATCATTTGAAGATATTGGCTTCTGCAAAGGGTTTTGTCCATCTTCCTTGGAAGGCACTACTGA
CTCAGGTTGGTCACCTTTCTGTCGAGAATCTGCTCCAGCCCAATGCATAAGGCACCTGAGAAGTTTAGGTGGTCTTTCTGTTAGGAGGTCCTTGGTTGGT
TCATTTGAGGAGTCACTACTGTCTGGACGGTTCTTTTGTGGAAAATTCACTCAGAGAATTGATGGCTTCCTAGCTGTGTTAAGCATTACTGGAGGGAACT
TTTCACCGCAATCACAGAAGCTTCCATTTTCAGTGACCAGTGTAGATGGAGATTGCTATCTACTGTATTATGCATCCATAGATCTTAGTAGAAATTCATC
ATCAAACAAGTGTAGGGGACAAAAATTTAAAAGATGCCTAAGCAATGATGATTCTCAAATTGTCAGGAGTCGCTTGCATATACCCATGAAAGGTCGAATA
CAACTGGTTATCAGCAATCCGGAGAAAACTCCTCTTCACACATTCTTTTGCAACTATGATCTGAGTGACATGCCTGCTGGCACCAAAACGTTCCTGCGCC
AGAAGGTCTCTTTGGCTTCTTCTGGACCAACTTCGACAGAACTGAAACAAGGACAGATGGGTTTGGACACAAAAGTGAAAGACAAGGTGTCACCAGTATC
ACAGAAAAGCCATCCTGTATACCCTGCAGCTTCTGATGGCCAGAAGAGTAAAATTAAAGGAAGTGAATCCTGTGATATACTGGATGTGGTTGATGCCAGG
AGTTTCCCCAAGCAATCTCGAATTGTAGAAAAGGTGACTGTGGACTCTTTGATGCTCGAGGCCAACTGCAGTACTCCTAAATGCCAGAGGACTGCAGGGA
AGGAGTCCGCTGGGGTGGAAACATGCAATAAAACTGACAGAAAACCAGCTCATTGTTGTTCAAAGATAAATGAAAATACTCCCGGTGGTGGTGCTCTTCG
TTATGCACTTCATCTCCGTTTTCTATGCCCTTCACCGAAGAAGTCTTCTAAATCAGTTCAGAAATGCGTATCTGATCCTATAGCTATACCACAAAAGATG
AGCTTAGGTGTGGAAGGGGAGCGTAGGTTCTACTTGTACAATGACTTGAGAGTTGTGTTCCCTCAACGCCATTCAGATGCTGATGAGGGCAAGTTAAATG
TAGATTACCATTTCCCGGAAGATCCAAGATACTTTGACATCAGCAACTGA
AA sequence
>Potri.001G324700.4 pacid=42787538 polypeptide=Potri.001G324700.4.p locus=Potri.001G324700 ID=Potri.001G324700.4.v4.1 annot-version=v4.1
MGLPQVSSTDSANEVPAASLGTFLQSPPRYAGISGLDGGNIGRTVGHTRTSSLGDFQGKPSLDLLKYSENSFEFGRAVDVVSNFHGLKTGSVDEVGRCTP
KSGRNIPIPASRIVGFESHGMSFLNNGFEILSADHVCSSAVDGVTINEAESSGSLVRKRLLSSPLNDMLSAKQFYGESLDISCNTSRMSCPTHADHFKSS
ASHDYKKANVGRKIHISVPSRSLSGCWEQKNVPCDDSARRSVCLTDGPLLEKNDALSCINCFYSPGHNHYLESKVSSQKGFSSPLSLSPLGPKSCVSMKT
VGGCREVKSQFEDCYLNLEKIGHSFDRNDSGINFASEEAEFRISSRSFEDIGFCKGFCPSSLEGTTDSGWSPFCRESAPAQCIRHLRSLGGLSVRRSLVG
SFEESLLSGRFFCGKFTQRIDGFLAVLSITGGNFSPQSQKLPFSVTSVDGDCYLLYYASIDLSRNSSSNKCRGQKFKRCLSNDDSQIVRSRLHIPMKGRI
QLVISNPEKTPLHTFFCNYDLSDMPAGTKTFLRQKVSLASSGPTSTELKQGQMGLDTKVKDKVSPVSQKSHPVYPAASDGQKSKIKGSESCDILDVVDAR
SFPKQSRIVEKVTVDSLMLEANCSTPKCQRTAGKESAGVETCNKTDRKPAHCCSKINENTPGGGALRYALHLRFLCPSPKKSSKSVQKCVSDPIAIPQKM
SLGVEGERRFYLYNDLRVVFPQRHSDADEGKLNVDYHFPEDPRYFDISN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26890 unknown protein Potri.001G324700
[exp]
0 1
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
3.31 0.9241
AT1G27850 unknown protein Potri.010G056200
[exp]
6.48 0.9217
AT1G28240 Protein of unknown function (D... Potri.004G044100
[exp]
9.38 0.9188
AT2G31930 unknown protein Potri.009G024700
[exp]
9.48 0.9151
AT2G35880 TPX2 (targeting protein for Xk... Potri.016G066600
[exp]
11.22 0.9146
AT5G35960 Protein kinase family protein ... Potri.014G136300
[exp]
13.41 0.9020
AT1G21070 Nucleotide-sugar transporter f... Potri.005G260300
[exp]
15.19 0.9128
AT2G35880 TPX2 (targeting protein for Xk... Potri.006G200400
[exp]
15.55 0.8992
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.009G012200
[exp]
17.20 0.9048 FLA14.12
AT1G53035 unknown protein Potri.001G399900
[exp]
17.88 0.8958

Potri.001G324700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.