Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 422 / 8e-140 hydroxyproline-rich glycoprotein family protein (.1) AT5G41100 357 / 2e-115 unknown protein AT3G26910 344 / 4e-110 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063000 [exp] 939 / 0 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 503 / 3e-171 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G166300 [exp] 503 / 4e-171 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032001 [exp] 625 / 0 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1) Lus10035172 [exp] 586 / 0 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1) Lus10002580 [exp] 392 / 3e-128 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1) Lus10001808 [exp] 376 / 6e-120 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [poplar] [flax] Golgi-transport PF16746 [poplar] [flax] BAR_3 BAR domain of APPL family
Representative CDS sequence Show only first row Show all	>Potri.001G324800.1 pacid=42788713 polypeptide=Potri.001G324800.1.p locus=Potri.001G324800 ID=Potri.001G324800.1.v4.1 annot-version=v4.1 ATGAAGTCCAAACTGAGAGGATTTAGACTCAGAAGAAGCGAACCGAAGGACAAAATTGACTTCTTACCTCCTGCTCAGTTAGATGAGCTCGCTCAAGCTG CTCAGGATATGAAAGACATGAAGAATTGCTATGATAGTTTACTTTCTGCAGCTGCAGCAACAGCAAACAGTGCATATGAATTCTCAGAGTCATTGCGGGA AATGGGTTCATGTCTGTCGGAGAAAACAGCATTACATGATGATGAAGGAAGTGGTAGGGTTTTGCTAATGTTGGGGAAAGTGCAGTTTGAACTTCAAAAA CTTCTTGATAGTTATCGGTCTCATATATTCCTGACGATTACAAATCCATCAGAATCCTTGCTCAATGAACTTCGGACAGTTGAGGATATGAAGCGACAAT GTGATGAAAAAAGAAATGTCTATGAATACATGGTGGCACAACAGAAGGACAAAGGAAGGTCAAAAGGTGGGAAGGATGAAAGTATTACTTTGCAGCAATT GCAAACAGCTCGTGAAGAATATGACGAAGAGGCAACCTTGTGTGTTTTTCGGTTGAAATCTCTGAAACAGGGACAGTCTCGAAGTCTTCTAACACAGGCA GCTCGTCATCACGCTGCTCAGTTGAATTTCTTTCAGAAGGGACTTAAATCACTTGAGACAGTTGAGCCACATGTTAGACTGGTTACAGAACATCAACACA TTGACTACCATTTCAGTGGGCTTGAAAGTGATGGTAGAGAAGACGGCGAGGATGATGGCGAGGATGGCGGTGATACAAATGAACGCAGGGAACTGAGTTT TGATTACAGAGAAAATAATCAGGGGAATGCTGTTGTTTCTGCAGCAAGGGGTTCTATGGAGGTGGATGAAGAGGACCTTTCATTCCAAGTTCCAGCAGCA GAAAATGTAGAGTTAAACCCAGACAAAAACCATGGTGGTTTCCAGTTCCCAAGCAGAGAACCAAGAGGAGGCAGCCATTCAGCACCAATAGTTCCAGAAA GAAAACCTGATCCAGTTGAAAGAATAAGACAAATGCAGCAAGCATCAAGGAAGTCCAACACATATGTGCTGCCCACACCTATTGATGCAAAGGGTGCAAT CTCTTCAAGAACAAGTTGTTCAGTTCCCAACACAAGGCAAACAGACATCAGTGGACGCGCTCACAATTTGTGGCATTCTTCCCCATTGGAACAGAAGAAG AATGAGAAAGATTCTGGTGATGGTCACCTGTCAGATTTCACTGCTTTAAAAGCACGCTCAGGACATAAAGAGAGCAACAATCCTAATGCCTCCACCCAAT TACCCCCACCTTTAGTTGGTGGAATCTCATATCCGCAGCTTGATGTACACAATGCATCCGATTACAAAAAAAATAAATGGCAATCCTTCTCTGGTCCAAT AACCAGTAAGCCATGGTCAATGAAGCCTTTATCATCCAGTGGTCCCATTTCCTCAACTGAACTTTCACAACAAGTTTCTGGAATGCTATCTCGTGGGGCA AATCCTCAACCTTCTTCATCCCCCAAAGTATCCCCAAGTACATCACCTCCTCTTGTTTCTTCACCCAAGATAAGTGAGCTTCATGAACTTCCAAGGCCAC CAGGTAATTTAGCTGCCAAAGCTGCAAAACCTTCAGTGCTGATTGGACACTCTGCTCCATTGTCGAGAAATCCCGAGCTTGCTGGAACAAGCAAGATTTC TACAGGGGCAGCAAATTTGGCATCACCTCTTCCTCCCCCACCCTTGATAGTCCCACGTAGTTTCTCAATACCCTCGAGTAGTCAGAGAGCCATGACAGTG CACGTTTCTAAGCTTTTGGATTCTTCTCAAGTATCATATAAACCTGGGGAAGTCGATTCTCCTCCATTAACACCCATGTCCCTCGCAAATATGAGGCCAG CACCTGCCATTTCTGAACCAGTACCGCATTCTGGTCAAATTAGAGGTGGGAGCTGA
AA sequence Show only first row Show all	>Potri.001G324800.1 pacid=42788713 polypeptide=Potri.001G324800.1.p locus=Potri.001G324800 ID=Potri.001G324800.1.v4.1 annot-version=v4.1 MKSKLRGFRLRRSEPKDKIDFLPPAQLDELAQAAQDMKDMKNCYDSLLSAAAATANSAYEFSESLREMGSCLSEKTALHDDEGSGRVLLMLGKVQFELQK LLDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMVAQQKDKGRSKGGKDESITLQQLQTAREEYDEEATLCVFRLKSLKQGQSRSLLTQA ARHHAAQLNFFQKGLKSLETVEPHVRLVTEHQHIDYHFSGLESDGREDGEDDGEDGGDTNERRELSFDYRENNQGNAVVSAARGSMEVDEEDLSFQVPAA ENVELNPDKNHGGFQFPSREPRGGSHSAPIVPERKPDPVERIRQMQQASRKSNTYVLPTPIDAKGAISSRTSCSVPNTRQTDISGRAHNLWHSSPLEQKK NEKDSGDGHLSDFTALKARSGHKESNNPNASTQLPPPLVGGISYPQLDVHNASDYKKNKWQSFSGPITSKPWSMKPLSSSGPISSTELSQQVSGMLSRGA NPQPSSSPKVSPSTSPPLVSSPKISELHELPRPPGNLAAKAAKPSVLIGHSAPLSRNPELAGTSKISTGAANLASPLPPPPLIVPRSFSIPSSSQRAMTV HVSKLLDSSQVSYKPGEVDSPPLTPMSLANMRPAPAISEPVPHSGQIRGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	1.73	0.8729
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	2.00	0.8788
AT3G62210		EDA32	embryo sac development arrest ...		Potri.013G003000 [exp]	6.32	0.8192
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.004G208900 [exp]	8.66	0.8665
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	8.71	0.8668
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	11.83	0.8566
AT1G07870			Protein kinase superfamily pro...		Potri.001G234100 [exp]	12.48	0.8197
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	21.49	0.8541
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	22.97	0.8176
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G168700 [exp]	26.15	0.8207

Compare expression of checked genes

Potri.001G324800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.