Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAC114
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13180 162 / 2e-49 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 149 / 8e-44 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT5G14000 141 / 9e-42 NAC ANAC084 NAC domain containing protein 84 (.1) AT3G15510 122 / 9e-33 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G77450 114 / 2e-30 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G01720 114 / 3e-30 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G61110 114 / 6e-30 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04060 114 / 8e-30 NAC ANAC046 NAC domain containing protein 46 (.1) AT3G04070 112 / 3e-29 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G39610 111 / 3e-29 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063300 [exp] 398 / 3e-142 AT5G13180 150 / 9e-45 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 194 / 1e-61 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.001G061200 [exp] 187 / 1e-58 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 153 / 9e-46 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 149 / 4e-44 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.011G046700 [exp] 125 / 9e-34 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.013G054000 [exp] 123 / 3e-33 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.001G404400 [exp] 123 / 3e-33 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.002G081000 [exp] 122 / 3e-33 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002581 [exp] 188 / 3e-59 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10041534 [exp] 186 / 2e-58 AT2G33480 125 / 1e-34 NAC domain containing protein 41 (.1.2) Lus10001809 [exp] 181 / 1e-56 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10012557 [exp] 169 / 7e-52 AT5G14000 122 / 4e-34 NAC domain containing protein 84 (.1) Lus10032004 [exp] 159 / 9e-48 AT5G14000 113 / 2e-30 NAC domain containing protein 84 (.1) Lus10035174 [exp] 154 / 5e-46 AT5G14000 115 / 2e-31 NAC domain containing protein 84 (.1) Lus10032657 [exp] 124 / 4e-33 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 122 / 1e-32 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10006547 [exp] 121 / 3e-32 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10011215 [exp] 121 / 3e-32 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G325100.1 pacid=42793721 polypeptide=Potri.001G325100.1.p locus=Potri.001G325100 ID=Potri.001G325100.1.v4.1 annot-version=v4.1 ATGGAAAGGCCAAACTTTGTTGAGAATGGAGGGCTCAGATTGCCTATTGGATATAGGTTTCATCCAACGGATGAAGAGCTTGTTGTTCATTACCTGAAGC GAAAGGTCCTTGGTCTTCCATTGCCAGCTGCTGTCATTCCTGAGTTTGATGTATTCCAAACTGATCCTTGGAGCTTGCCAGGTAATTTGAAGGAAAAGAG GTACTTCTTTAGCCAAAAGAAGTTGAATGACTTTGGAACAAAATGCAAGAGATCCGCTGGTTATATACCTTCTGGTTACTGGAAACCCGTTGGGAAAGGC AAGCAAATTGTAGCTTCTGGTAGCAACCAAGCAGTTGGAATAAGGAAAACGCTGGTTTTCAGAGAAAGAAATCATTCTAGTAAGACTAGAACTCAATGGG TGATGCATGAATATTGCCTTGTAGGCTTGCCAACAGACCCCAAAACCACCCAGATGAAAGTGGGAGATTGGGTTGCTAACAGTATATTTCACAGGAAGAG GAAACCTAAAAACCATGTGGTCATGATTTCCAACCCTTCAAACATTAACAAGAGGCAAAATGTCGAGATTATTAGTCCTAGTTTCATGGATTTTATGATG GAACAAAGCTCTGATGAAGCTGGTGCTCCTTCACAATGTTCAAGTGGAGTCACCGAGGTGTCTTCTAATGAGTTTGATCAGGAAGAAATCAGTTCCTTCA TTAGCCTGTTTACTTATCCTTGTAAGAGGAAGAGGACTTGA
AA sequence Show only first row Show all	>Potri.001G325100.1 pacid=42793721 polypeptide=Potri.001G325100.1.p locus=Potri.001G325100 ID=Potri.001G325100.1.v4.1 annot-version=v4.1 MERPNFVENGGLRLPIGYRFHPTDEELVVHYLKRKVLGLPLPAAVIPEFDVFQTDPWSLPGNLKEKRYFFSQKKLNDFGTKCKRSAGYIPSGYWKPVGKG KQIVASGSNQAVGIRKTLVFRERNHSSKTRTQWVMHEYCLVGLPTDPKTTQMKVGDWVANSIFHRKRKPKNHVVMISNPSNINKRQNVEIISPSFMDFMM EQSSDEAGAPSQCSSGVTEVSSNEFDQEEISSFISLFTYPCKRKRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.001G325100 [exp]	0	1	NAC114
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	8.00	0.8876
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	8.71	0.8808	Pt-MPK3.2
					Potri.018G078801 [exp]	9.00	0.8699
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	13.78	0.8566	CPK18
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.008G134000 [exp]	14.31	0.8696
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.010G107300 [exp]	14.69	0.8102
					Potri.012G007100 [exp]	16.06	0.8660
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.018G129200 [exp]	18.54	0.8698
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.018G032200 [exp]	20.49	0.7913
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	24.79	0.8245

Compare expression of checked genes

Potri.001G325100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.