Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SRG3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 509 / 0 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 503 / 2e-179 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 411 / 3e-143 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063500 [exp] 695 / 0 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G061100 [exp] 520 / 0 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012556 [exp] 575 / 0 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10035175 [exp] 549 / 0 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10032006 [exp] 542 / 0 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10002582 [exp] 461 / 7e-163 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10011337 [exp] 430 / 4e-151 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10041535 [exp] 218 / 2e-70 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.001G325200.1 pacid=42792702 polypeptide=Potri.001G325200.1.p locus=Potri.001G325200 ID=Potri.001G325200.1.v4.1 annot-version=v4.1 ATGGCTCTTAAAGCTGTTCATGTCTCTGATGTTCCTAATCTTGACCACGTCCCTGAGAATGCCTCTCTTTCTCTCTGCTCAACTCGTTTCTCCAAAGGAG TTGAATTGAATAGAGAAGCTGCGTTCAAGACACCAAAGTTTTTGGTGTTTGGGCATAGAGGGAATGGAATGAATATCTTGCAATCAACAGATCGTAGGAT GAAAGCTATTAAAGAGAACTCCATTATGTCTTTTAATAGTGCTGCTAAACACCCCATTGATTTCATCGAATTCGATGTTCAGGTCACAAAAGATGATTGT CCAGTCATTTTCCATGACGACTTCATCCTCTCTGTAGATAATGGCATCATTTTCGAGAAGAGAGTGACAGAACTTTCCCTGTCTGAATTCCTATGCTATG GACCCCAAAAAGAAGCAGGAAAATCAGGCAAATCTTTGGTTAGGAAAACAAAAGATGGGAAAATAGTAGAGTGGAATGTAGAGAAAGATGACTCATTGTG CACTCTGCAAGATGCGTTTCAACAAGTGGAGCCTTCACTTGGCTTTAACATTGAATTAAAATTCGATAATCACATTGTCTACCAGCAAGATTATCTCATT CGTGTTCTTCAAGCCATCTTGCAGGTGGTATTTGAGCATGGTAAGGATAGGCCTATTATTTTCTCATCATTCCAACCTGATGCAGCATTGCTTGTCAGAA AACTGCAGAGCACCTACCCTGTTTACTTCTTGACAGATGGGGGTGTTGAGATTTTCTATGATGTAAGGAGAAATTCCTTAGAGGAGGCTATAAAGGTGTG CTTGGAGGGTGGTTTGCAAGGGATTGTATCTGAGGTCAAAGCGGTTTTTAGGAACCCTGGGGCAGTATCCAAGATCAAGGATGCCAAGCTTTCACTTATA ACTTACGGAAAATTGAATAATGTATCAGAAGCTGTTTACATACAACATTTAATGGGTATCGATGGAGTGATAGTTGATCTGGTTCAAGAGATCACTGAGG CGGTATCTGATCTGATAAGGCCATCAAAGGTGGAAGAAGCAGAGAGTTCAGCAGAAGGGCATGATGAGATGGAGGAGAAATCAAAGCCCAAATTCTCACA GAGGGAGCTTTCATTTCTTTTGAAGCTCATTCCAGAATTGATACAGCATTAA
AA sequence Show only first row Show all	>Potri.001G325200.1 pacid=42792702 polypeptide=Potri.001G325200.1.p locus=Potri.001G325200 ID=Potri.001G325200.1.v4.1 annot-version=v4.1 MALKAVHVSDVPNLDHVPENASLSLCSTRFSKGVELNREAAFKTPKFLVFGHRGNGMNILQSTDRRMKAIKENSIMSFNSAAKHPIDFIEFDVQVTKDDC PVIFHDDFILSVDNGIIFEKRVTELSLSEFLCYGPQKEAGKSGKSLVRKTKDGKIVEWNVEKDDSLCTLQDAFQQVEPSLGFNIELKFDNHIVYQQDYLI RVLQAILQVVFEHGKDRPIIFSSFQPDAALLVRKLQSTYPVYFLTDGGVEIFYDVRRNSLEEAIKVCLEGGLQGIVSEVKAVFRNPGAVSKIKDAKLSLI TYGKLNNVSEAVYIQHLMGIDGVIVDLVQEITEAVSDLIRPSKVEEAESSAEGHDEMEEKSKPKFSQRELSFLLKLIPELIQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G325200 [exp]	0	1	Pt-SRG3.1
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	8.00	0.8483
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	8.60	0.8563
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	11.61	0.8420
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	15.68	0.8562
AT2G25735			unknown protein		Potri.006G244200 [exp]	34.77	0.8051
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	35.49	0.8320	Pt-AUX28.3
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067567 [exp]	42.48	0.8048
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067600 [exp]	58.78	0.7824
AT5G50610			unknown protein		Potri.003G168200 [exp]	62.86	0.8350
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	64.12	0.7647

Compare expression of checked genes

Potri.001G325200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.