Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26932 313 / 1e-103 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 314 / 3e-103 DRB5 dsRNA-binding protein 5 (.1) AT2G28380 286 / 5e-92 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 132 / 2e-34 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 98 / 8e-22 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) AT5G04895 42 / 0.001 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 715 / 0 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.013G032400 [exp] 305 / 9e-98 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 288 / 7e-91 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 134 / 6e-34 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 126 / 7e-33 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 122 / 7e-31 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G037900 [exp] 125 / 1e-30 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 114 / 3e-27 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.005G153200 [exp] 106 / 4e-25 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035176 [exp] 356 / 2e-119 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 349 / 8e-117 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 270 / 3e-85 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 263 / 2e-82 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10041311 [exp] 121 / 8e-31 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 114 / 2e-29 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 120 / 1e-28 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 96 / 4e-21 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 96 / 9e-21 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 96 / 1e-20 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.001G325300.1 pacid=42789110 polypeptide=Potri.001G325300.1.p locus=Potri.001G325300 ID=Potri.001G325300.1.v4.1 annot-version=v4.1 ATGTTTAAGAACCAACTGCAAGAACTTGCACAAAGAAGTTGTTTCAACCTCCCTTCTTATGCTTGCATTAGAGAAGGACCTGATCATGCACCAAGATTCA AAGCTTCTGTGAACTTTAATGGTGAGATCTTTGAAAGTCCAAGTTACTGCACTACATTGAGACAGGCGGAGCATGCGGCTGCTGAAGTTGCCCTTAATGT TTTGTCTTTAAGGGGTCCTGCAAGGTCTCTAACAGCAAGAGTTCTTGATGAGACTGGAATTTACAAGAACCTACTTCAAGAAACTGCCCATAGAGCTGGG CTTAACCTCCCTGTATATACCACTGTAAGATCAGGTCCTGGTCATGTCCCAGTTTTCACTTGTACCGTGGAGCTTGCTGGTATGAATTTCACGGGTGAGC CAGCAAAGACTAAGAAACAAGCTGAGAAGAATGCAGCTATTGCAGCCTGGTCCGCTTTGAAAAGATTTCCAAACTTGGACTCTTTGAGTAGCAAAGAAGT AGACACTCGTGAAGAACAAGATCAAGCAGTTGTGGCAAGGGTACTGTCAAATTTCAGATCCAAAGATGAAGGTAGATATGCAAGAAAGAGGGATCATAAT CAAGCAAGAAGAAGAATGGTTAGAGGGCACAAAGACAGTAGCGGTGCATCATCTTCCTCCACCTCAAATAACTTTCTACTGTATCCACATCGGAGGCTCC TGGATCTTATATTGGATTCTACCTTAGATGGTTCAACACAAATGCAGAAGTCCTCCTTTATGTCTCTCCTTCCTCCACCCCCACCCAGAACAAGTTCAAA GATTTTGCCACCGCCCTCACATATAGACAATCCATCTCTATACTCATCGAACAGGCCTATTCCAATACAAGTTAAGGGAAAATCACAAGTTCATGTCCCA CTTGAAGAGCATTTAAAGGATGAAGAAGAATGGTTAGGTACTAAACCAGATGTCATCAAGAAACACATTGAAAAGGAGAGTGCCAGCAATTCAAGTTCAA GTAATCTTTACGGATCAAGTTCATTATACAGGCCATTTCCTTTCTCCAATACTGGGAAGCCAGTCACTTCCTTGCCTGATAACACTAGCCAGCACGAATC AACCCACATTAGTAGCAGAATTTTTGGGTCTACAAATCCATCTCCAATGGCATCCATTTCCATCAAGACACCCTCAAGTACCCATGTTCCAAGGCCTATG TTCACTGGAGGGTTTAACCCTCACAGGATTGCACCAGCTGTTCAAATAAGGTCAGTGATCCCAGTTTGTGCAGCACCACCATCACCAAGCAGACCCCCAC AATCATCATCAGCTACAGGTGCTCCTTCCCATTCTACCTTCAAAGGAGTAGCTGAGGTATCAATGCTCAACAAGACAGAGTCAAATCCTCAACCGAGTTC TACCGAATTCAAAAACAAGCTACAATTATTATGA
AA sequence Show only first row Show all	>Potri.001G325300.1 pacid=42789110 polypeptide=Potri.001G325300.1.p locus=Potri.001G325300 ID=Potri.001G325300.1.v4.1 annot-version=v4.1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAG LNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRFPNLDSLSSKEVDTREEQDQAVVARVLSNFRSKDEGRYARKRDHN QARRRMVRGHKDSSGASSSSTSNNFLLYPHRRLLDLILDSTLDGSTQMQKSSFMSLLPPPPPRTSSKILPPPSHIDNPSLYSSNRPIPIQVKGKSQVHVP LEEHLKDEEEWLGTKPDVIKKHIEKESASNSSSSNLYGSSSLYRPFPFSNTGKPVTSLPDNTSQHESTHISSRIFGSTNPSPMASISIKTPSSTHVPRPM FTGGFNPHRIAPAVQIRSVIPVCAAPPSPSRPPQSSSATGAPSHSTFKGVAEVSMLNKTESNPQPSSTEFKNKLQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.001G325300 [exp]	0	1
AT3G60320			Protein of unknown function (D...		Potri.014G047400 [exp]	2.00	0.8614
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	2.64	0.8796
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.017G063700 [exp]	8.12	0.8005
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.002G028500 [exp]	8.24	0.8128
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	8.36	0.8780
AT1G72125			Major facilitator superfamily ...		Potri.017G145550 [exp]	8.36	0.8468
AT5G62170			unknown protein		Potri.015G135200 [exp]	15.16	0.8086
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	16.73	0.8473
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.014G032600 [exp]	17.97	0.8358
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	19.51	0.8719

Compare expression of checked genes

Potri.001G325300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.