Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 688 / 0 DHHC-type zinc finger family protein (.1) AT5G41060 592 / 0 DHHC-type zinc finger family protein (.1.2) AT3G48760 481 / 5e-168 DHHC-type zinc finger family protein (.1) AT4G24630 408 / 1e-140 DHHC-type zinc finger family protein (.1) AT5G50020 382 / 1e-129 DHHC-type zinc finger family protein (.1.2) AT3G56930 369 / 4e-124 DHHC-type zinc finger family protein (.1.2) AT5G05070 340 / 1e-113 DHHC-type zinc finger family protein (.1) AT2G40990 307 / 7e-101 DHHC-type zinc finger family protein (.1) AT3G56920 296 / 1e-97 DHHC-type zinc finger family protein (.1) AT3G04970 88 / 9e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063800 [exp] 764 / 0 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 547 / 0 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 531 / 0 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 422 / 9e-146 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 419 / 2e-144 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 419 / 2e-144 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 405 / 5e-139 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 372 / 2e-127 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 362 / 4e-121 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032009 [exp] 694 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 693 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 446 / 2e-154 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 445 / 7e-154 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 405 / 6e-139 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 399 / 1e-135 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 358 / 9e-122 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 353 / 2e-119 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 347 / 7e-116 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 327 / 8e-105 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G325400.1 pacid=42789490 polypeptide=Potri.001G325400.1.p locus=Potri.001G325400 ID=Potri.001G325400.1.v4.1 annot-version=v4.1 ATGTATGTGGTGCCACCACCAAAGGGATCATCGGACACTGGATCCAATGGAGTCGGGTCGGGTGATTTGCGGGTTTATCAAACTTGGAAAGGCAGTAACA TATTTTTTCTTCGAGGAAGGTTTATTTTTGGACCAGATGTAAGATCGCTTGCATTGACTGTATTCCTGATTGTTGCTCCAGTAGCACTATTCTGTATCTT TGTCGCCAGAAAGCTGATGGATGATTTTTCAGATGATTGGGGAATATCAATAATGGCAGTTGCTGTCGTGTTCACTATTTATGATTTAGTTCTTCTCCTG CTAACATCTGGAAGGGATCCTGGCATAATTCCACGCAATGCACATCCACCAGAACCTGAAGGCTTTGATGGGAGTGCAGATGTTGGGTCTGGTCAGACTC CACAATTACGTCTGCCACGTGTTAAGGAGGTGGAATTCAATGGAATGACTGTGAAGGTTAAGTATTGTGATACTTGCATGCTTTACAGACCACCTCGCTG CTCGCATTGTTCAATATGCAATAACTGTGTTGAAAGATTTGACCATCACTGCCCTTGGGTTGGGCAATGTATTGGCTTGAGAAATTATCGATTCTTCTTC ATGTTTGTCTTATCAACGACCCTTCTTTGTATATATGTTTTTGCTTTCTGCTGGGTCTACATTAGGAAGATCATGGGATCAGAGAACATCTCAACTTGGA AAGCAATGATCAAAACCCCTTCCTCCATTGTTTTAATAGTTTACACGTTCATATCAATGTGGTTTGTCGGTGGTCTTACTGCCTTCCATCTGTATCTCAT CAGCACAAATCAGACCACTTATGAGAATTTCCGATATCGCTATGATAGGCGGGCAAATCCTTTTTATAAAGGATTGGTGGAGAACTTCAAGGAGATCTTT TGCTCCAGTATCTCCCCTTCTAAGAACAATTTCAGGGCGAAGGTGCCCCGGGAACCTGCATTACCCACCCGGACACTTGGTGGGGGCTTCATGAGTCCAA ATATGGGTAAAGCTGTCGGTGACATAGAAATGGGTAGGAAAACTGTATGGGGAGACATGAGTGCTATGGCTGATGGCGAAGGACAACCTGCCAACAATGA TCGGTTGAACATAAAAGATGGTGAACTAGGCGAGTTATCCCCGGATATCAGGACCACAGTAGATGAAGTTGGGGACCGTGGTGGATTGCATCCTAGGCGA TCGAGTTGGGGAAGAAAAAGTGGAAGCTGGGAGATGTCACCTGAAGTTCTTGCTTTGGCAGCTAGAGTGGGGGAATCTAACCTTGTGGGTGGTGGGAGCA GCAGTGGCAGCTTAACAACTGAGAACCGACAATCATAG
AA sequence Show only first row Show all	>Potri.001G325400.1 pacid=42789490 polypeptide=Potri.001G325400.1.p locus=Potri.001G325400 ID=Potri.001G325400.1.v4.1 annot-version=v4.1 MYVVPPPKGSSDTGSNGVGSGDLRVYQTWKGSNIFFLRGRFIFGPDVRSLALTVFLIVAPVALFCIFVARKLMDDFSDDWGISIMAVAVVFTIYDLVLLL LTSGRDPGIIPRNAHPPEPEGFDGSADVGSGQTPQLRLPRVKEVEFNGMTVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFF MFVLSTTLLCIYVFAFCWVYIRKIMGSENISTWKAMIKTPSSIVLIVYTFISMWFVGGLTAFHLYLISTNQTTYENFRYRYDRRANPFYKGLVENFKEIF CSSISPSKNNFRAKVPREPALPTRTLGGGFMSPNMGKAVGDIEMGRKTVWGDMSAMADGEGQPANNDRLNIKDGELGELSPDIRTTVDEVGDRGGLHPRR SSWGRKSGSWEMSPEVLALAARVGESNLVGGGSSSGSLTTENRQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.001G325400 [exp]	0	1
AT1G32050			SCAMP family protein (.1)		Potri.001G134100 [exp]	12.80	0.8388
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.014G049800 [exp]	14.28	0.7823
AT5G11460			Protein of unknown function (D...		Potri.006G245200 [exp]	18.89	0.7738
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.010G238500 [exp]	19.44	0.7938
AT4G25680			PPPDE putative thiol peptidase...		Potri.017G143132 [exp]	22.11	0.8160
AT1G29200			O-fucosyltransferase family pr...		Potri.004G058900 [exp]	23.00	0.7711
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	23.91	0.7702
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	25.53	0.8138	ATHB.12
AT1G19350	BZR	BZR2, BES1	BRASSINAZOLE-RESISTANT 2, BRI1...		Potri.016G125700 [exp]	26.83	0.7711
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	27.54	0.7336

Compare expression of checked genes

Potri.001G325400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.