Plant FIBer expression Database

Potri.001G325500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26950 647 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035181
[exp]
682 / 0 AT3G26950 656 / 0.0 unknown protein
Lus10032011
[exp]
609 / 0 AT3G26950 575 / 0.0 unknown protein
Lus10032012
[exp]
549 / 0 AT3G26950 512 / 3e-178 unknown protein
Lus10035179
[exp]
330 / 3e-108 AT3G26950 304 / 2e-98 unknown protein
Lus10035180
[exp]
109 / 4e-28 AT3G26950 96 / 6e-24 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G325500.1 pacid=42789923 polypeptide=Potri.001G325500.1.p locus=Potri.001G325500 ID=Potri.001G325500.1.v4.1 annot-version=v4.1
ATGAAGCATTATTACTATCATGGATCAAGGAGGAGAAGAGTGACCGTACACTCTCTTCTCATCGTAATCGCCATTTTCACTGGATTAGGCTTGCTAATTC
TCACTCTGAAATCCGTTGATCCACCTGAACCTACTCGCTTTCTCCCAAATATCAAAGAAGAATCGAGCTCGAGCTCCTCCGTGGGACCGGTGATTGCGAG
AAATATTGGAGGAGGAGGAGGAGCGAAATCGTGCGCTACTGTTGAAGAAATGGGCGAGAACCTCAAAGGAGACCGTGTCTGGAAAGAGAGTCTAAGAGTC
AGAAACATTATCGCCGACCACTTCGACTCAAACGGGGTTTCAAGAGTGCGAGATCTTCCAGCAGAGCAGTTTTGCAGACACGGTTTTGTGTTGGCGAAAG
CATCGGAGGCAGGTTTAGGGAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGCGTAATGCTGAATCGTTCGCTGATCATTGGACAAACCAGGGG
TAAGTATCCTTTTGGGGATTATATTTCGTATTCAAATCATTCCTTTACGATGCAAGAAGTTAAGCATCTGTGGAGAAGAAATGGTTGCGTAAAGAATTAT
CAAAGGCATTTGGTTATGAGGATTGATGATTTTGGGAAGCCAACGAAAACCAATGTGCTTTGTAGCAATTGGAGGAAATGGGACCAACCTATCATATGGT
TTCAGAACACAACTGATGCTGTGGCCAGTCAATTTTTCTTGAAGAATGTACACCCTGAGATGAGGAATGTTGCTTCTAAATTGTTTGGACAGCCTGAACA
ACTCCAGGCGCGCCCAAATGTTTTTGGGGAGCTGATGAGAATTCTGATATCGCCTTCAGAAAATGTTGAGGAAGTGGTCAATTGGGTTCTTCATGATGGG
GTGGATCCTGATATTTCTTTGCACATGCGGATGCTTATGAACAGGTCTGTGAGAGCTCCACAGGCAGCATTGAACTGCATCAGGAGAGCTCTGCGCAAGC
TACACCAGATTTCAAGACCTAGAGTGGTTTTAGTAACAGATACCCCCTCTTTTGTAAAAAGCATTCTTCCAAACATAAGTGAATTTGCAGAGGTTCTCCA
TTTTGATTATAAGCATTTCCAAGGAAATATCTCCCGCGCTGTTAATACATCCCGTAGTTTAGAATTTAGGGTAAAGGATTGGGGCCCTGCACCCAGATGG
GTTGCATTTGTGGACTTCTTCCTTGCTTCACGTGCGAAACATGCTGTTGTTTCTGGGGCTCACAGGCGTGTTGGGACTACATATGCCCAGTTAATTGCAG
CACTGGCCGCAGCCAACCACCTTGGAGAAAACTCTAATGGTTCCAGTTTTTCGTTCTTAAGCAGCTTCCAAAGTAATTTGCTAGCAGATGGTTTAAGGTT
ACAGGTTGGCTGGGGACATGTTTGGAACAGGTTTGCTGGTCCATTGAGTTGCGAAAACCAGTCCAACCAATGTGCTCACACGCCACTTCTCCCTCCAGCT
TGGTGGGATGGTCTTTGGCAATCTCCTATTCCACGTGATATCCGTAGGCTAGAAGCTTTCGGTATCAAACTATCTGGTTTTGGCACAATTGATGAAAAAT
ATCTTCAGTCATTTTGCAGTTCAAAGAAAAATACGGTGAACACTGCATTAATTTTGTAA
AA sequence
>Potri.001G325500.1 pacid=42789923 polypeptide=Potri.001G325500.1.p locus=Potri.001G325500 ID=Potri.001G325500.1.v4.1 annot-version=v4.1
MKHYYYHGSRRRRVTVHSLLIVIAIFTGLGLLILTLKSVDPPEPTRFLPNIKEESSSSSSVGPVIARNIGGGGGAKSCATVEEMGENLKGDRVWKESLRV
RNIIADHFDSNGVSRVRDLPAEQFCRHGFVLAKASEAGLGNEMYKILTAAALSVMLNRSLIIGQTRGKYPFGDYISYSNHSFTMQEVKHLWRRNGCVKNY
QRHLVMRIDDFGKPTKTNVLCSNWRKWDQPIIWFQNTTDAVASQFFLKNVHPEMRNVASKLFGQPEQLQARPNVFGELMRILISPSENVEEVVNWVLHDG
VDPDISLHMRMLMNRSVRAPQAALNCIRRALRKLHQISRPRVVLVTDTPSFVKSILPNISEFAEVLHFDYKHFQGNISRAVNTSRSLEFRVKDWGPAPRW
VAFVDFFLASRAKHAVVSGAHRRVGTTYAQLIAALAAANHLGENSNGSSFSFLSSFQSNLLADGLRLQVGWGHVWNRFAGPLSCENQSNQCAHTPLLPPA
WWDGLWQSPIPRDIRRLEAFGIKLSGFGTIDEKYLQSFCSSKKNTVNTALIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26950 unknown protein Potri.001G325500
[exp]
0 1
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Potri.002G240232
[exp]
12.96 0.7530
AT3G25590 unknown protein Potri.008G109600
[exp]
15.29 0.7542
AT2G45950 ASK20 SKP1-like 20 (.1.2) Potri.015G146500
[exp]
25.78 0.6797
AT5G15740 RRT1 O-fucosyltransferase family pr... Potri.012G064200
[exp]
31.63 0.6951
AT1G54610 Protein kinase superfamily pro... Potri.008G204400
[exp]
37.82 0.7398
AT4G02100 Heat shock protein DnaJ with t... Potri.002G197300
[exp]
65.71 0.7304
AT3G56930 DHHC-type zinc finger family p... Potri.016G025100
[exp]
82.61 0.7113
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Potri.016G098200
[exp]
98.63 0.7002 Pt-TIP2.8
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.004G206900
[exp]
134.78 0.7013
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Potri.006G083201
[exp]
137.36 0.6679

Potri.001G325500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.