Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13990 662 / 0 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G13150 565 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G58430 363 / 2e-116 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G72470 338 / 1e-106 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 328 / 4e-102 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 320 / 1e-99 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 312 / 9e-97 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07000 306 / 1e-94 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G03540 279 / 3e-84 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 276 / 5e-83 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G068000 [exp] 1110 / 0 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G060700 [exp] 610 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.013G152900 [exp] 345 / 2e-109 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.015G094800 [exp] 340 / 3e-107 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 335 / 2e-105 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 334 / 5e-105 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.019G124000 [exp] 333 / 6e-105 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.003G068700 [exp] 323 / 8e-101 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.008G017800 [exp] 295 / 4e-90 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041536 [exp] 722 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 700 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015757 [exp] 507 / 2e-171 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 473 / 8e-159 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 468 / 6e-157 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10037048 [exp] 347 / 9e-108 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10008126 [exp] 341 / 2e-107 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 331 / 2e-106 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 331 / 3e-104 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 330 / 2e-103 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.001G325600.1 pacid=42789911 polypeptide=Potri.001G325600.1.p locus=Potri.001G325600 ID=Potri.001G325600.1.v4.1 annot-version=v4.1 ATGGAAAGAGACTTGTCTGAAAAACATCCGCCTGAGAAACAGCTTTCTAATAATTCAGACAGTTCTGACAACGAAGAAAATGCCACCAACATTACTACCA ATCTCAATGCCAATCATCATGATCACCCCGAGACTGAAACCTGTGATCAGTTGGTGTCCCAGTCACCTAAAGCAGGGGTGAAAGTGGAAGAATCAGACAA TACAAGTCATGAGATCGAGGAAGTTCATCATGAGGAGAAAGAAAATGATGAAAAGATTGGAGACACCTCTCCTCCTGAAATTCATTATACCCTTGAAACT GTCTCTCAAGATATTGATCAGCTTATTACATCATTGTCAGCCACTCCGAAAGATGCAAAAGAAACAATTGTAGAAGAAGAAAAAGATGAGAAGGTGCCTA TGGAGATTCCTGTGTTTGTTGAGAAATTTTTGGATCTTGTTGAAGAAAAGGTGGCAAAACATGAGCTGACTGAAGGGAAAGGGAAGTGGGGTCAAAATCC TGAGGAGGATTCGTCGTTTCTTGAAGCTGTGAATCGGATTTCCAAGCTAACATCTTCCCTTGATGGATTGAGATCCGATCCAAATCATGCAGCATTGATC AGCCGTATTGGAGGGATTCAACAGCGAGCAATGACATGCTTGGAGGATGAATTCAGGTTCACTCTTGAAGATATTAAACATAATGATCAAGATCCTAATA CTGATGCAAAAGGGAAGCAACATGAAGCTGACCGCTGCGTACTGCCAGAATCTGAATCAGCAGAAACTGACAACTTCTTAGGATATTCTGATGACGCTGT TTCAAAATTGAATAGAATTGCCAAGGAGATGATTGGAGGTGGATTTGAATCTGAATGTTGCCATGTGTACATGATGATTAGGGGGCAAGCATTTGATGAG TGCTTCGCCGAGATAGGATTTGAGAAGATCAGCATTGATGAGGTGCAGAAGATGCAATGGGAAGCTTTGGAGAGAGAGATCCCTTTATGGATCAAGGCCG TCAGGGAATATGCAAGCATTTACTTTGTGAAAGAGCTAAAGCTCGCCGAGGCTATTTTCTCCAATTATTCCTCAATCTCCTCTAGCCTTTTCAGCAATCT TACGCGCAGTGTGTTGATACAGCTCCTAAATTTTGCTGAAGCTGTTGCAATGACAAAGCGCTCGGCAGAGAAGTTATTTAAGTTTCTTGACGTGTATGAA ACTCTGCGCGACAGTCTTCCAGCAATGGGGGCTTTGTTTTCAGAGGAATATGAAAATGAGCTTAAAACAGAGTCAACAACAGCTCGGTGTCGGATTGGAG AGGCTGCAATCTGTATGTTTTGTGATTTGGAGAATTCAATCAAGTCTGATACAGGAAAAACTCCAGTGCCTGGCGGTGCGGTTCACCCGTTGACTCGCTA CACGATGAATTATCTGAAGTATGCAGGTGAATACATAGCAACTCTTGAGCAAGTCTTTCGAGAACATTCAAAGATCGAACGTGCTGATTCAACAAGCAGG CCACGCTACGAAAGTGAGTCACAAAACTTTAACAATGACAATGATGAAGAAAATCAGTCTCCATTTTCAAATCAATTGGTGAGAGTAATGGACTTATTAG ACTCCAATTTGGAGGCCAAGTCCAAGCTTTATAAGGATATTGCATTGAGCTGCATTTTCATGATGAATAATGGACGCTACATTGTGCAAAAGATCAAAGG CTCCACAGAGATCCGTCAAATGATGGGAGATCCATGGTGCCGCAGGAAATCCTCGGAACTCAGGAACTACCATAAGAATTATCAAAGAGAGACGTGGAGC AAACTCCTGGGTTGTTTAGGCCATGAGGGACTGCAAGTGAATGGAAAAGTAATTAAGCCAGTGTTGAAAGAGAGGTTCAAGAGCTTCAACGTGTTATTTG ATGAGATCCACAAGGCGCAGAGCTCATGGGTGGTGAGTGATGAACAACTTCAATCAGAGCTTAGAGTTTCAATAACGGCGGTGGTGATACCAGCATACCG GTCCTTCATGGGGAGGTTTTCGCAGTATTTAACCCCTGGAAGGCAAACAGAAAAGTACATAAAATATCAGGCTGAAGACTTGGAGACTTATATTGATGAA CTTTTTGATGGAAATTCTGCCTCCGGGGCCCGAAAGAGACCATAA
AA sequence Show only first row Show all	>Potri.001G325600.1 pacid=42789911 polypeptide=Potri.001G325600.1.p locus=Potri.001G325600 ID=Potri.001G325600.1.v4.1 annot-version=v4.1 MERDLSEKHPPEKQLSNNSDSSDNEENATNITTNLNANHHDHPETETCDQLVSQSPKAGVKVEESDNTSHEIEEVHHEEKENDEKIGDTSPPEIHYTLET VSQDIDQLITSLSATPKDAKETIVEEEKDEKVPMEIPVFVEKFLDLVEEKVAKHELTEGKGKWGQNPEEDSSFLEAVNRISKLTSSLDGLRSDPNHAALI SRIGGIQQRAMTCLEDEFRFTLEDIKHNDQDPNTDAKGKQHEADRCVLPESESAETDNFLGYSDDAVSKLNRIAKEMIGGGFESECCHVYMMIRGQAFDE CFAEIGFEKISIDEVQKMQWEALEREIPLWIKAVREYASIYFVKELKLAEAIFSNYSSISSSLFSNLTRSVLIQLLNFAEAVAMTKRSAEKLFKFLDVYE TLRDSLPAMGALFSEEYENELKTESTTARCRIGEAAICMFCDLENSIKSDTGKTPVPGGAVHPLTRYTMNYLKYAGEYIATLEQVFREHSKIERADSTSR PRYESESQNFNNDNDEENQSPFSNQLVRVMDLLDSNLEAKSKLYKDIALSCIFMMNNGRYIVQKIKGSTEIRQMMGDPWCRRKSSELRNYHKNYQRETWS KLLGCLGHEGLQVNGKVIKPVLKERFKSFNVLFDEIHKAQSSWVVSDEQLQSELRVSITAVVIPAYRSFMGRFSQYLTPGRQTEKYIKYQAEDLETYIDE LFDGNSASGARKRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Potri.001G325600 [exp]	0	1
AT5G49960			unknown protein		Potri.004G223400 [exp]	12.32	0.8168
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	12.48	0.7150
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.004G031400 [exp]	13.26	0.7030
					Potri.001G103200 [exp]	16.30	0.7640
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G060300 [exp]	21.26	0.8079	RGP3.3
					Potri.004G075950 [exp]	28.61	0.7799
					Potri.009G097750 [exp]	30.14	0.7699
					Potri.002G132850 [exp]	31.62	0.7737
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080400 [exp]	40.49	0.7448
AT3G58610			ketol-acid reductoisomerase (....		Potri.013G117532 [exp]	43.80	0.7601

Compare expression of checked genes

Potri.001G325600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.