Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26990 468 / 4e-161 ENTH/VHS family protein (.1) AT5G65180 247 / 3e-76 ENTH/VHS family protein (.1.2) AT5G10060 247 / 5e-76 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086700 [exp] 275 / 4e-86 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080600 [exp] 249 / 3e-76 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 224 / 1e-66 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035182 [exp] 609 / 0 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10032013 [exp] 564 / 0 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1) Lus10005665 [exp] 243 / 2e-73 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1) Lus10020327 [exp] 238 / 2e-71 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G325700.2 pacid=42787535 polypeptide=Potri.001G325700.2.p locus=Potri.001G325700 ID=Potri.001G325700.2.v4.1 annot-version=v4.1 ATGGGAAGTTCGTTTAATCCTCAGATTTTTGTGGAGAAGCTTGCCAAGCTCAACAGTACACAGGCAAGCATAGAGACTCTATCACATTGGTGTATCTTCC ATATGAATAAAGCAAAACAGGTTGTTGAAACATGGGCCAGACAATTTCATTCTTCTCCACGTGACCGGAGATTGGCCTTTCTATATCTGGCAAATGATAT ATTGCAGAATAGTCGTCGAAAAGGTTCAGAGTTTGTGGGGGAATTCTGGAAGGTTCTTCCAGATGCTCTTCGTGACATGATTGAAAATGGGGATGAGTTT GGAAGAAATAATGCTCAACGATTGATTGGCATATGGGAAGAAAGAAAAGTTTTTGGTTCCCGAGGGCAAATTCTGAAGGAAGAGCTTGTGGGAAAGCAAG TGGAGAACAATAATAGAAATGGGAAGCATATAGGAACCAAAATGAAGCAGCCTACTGGAAGTACAATAGACAAGATAGTTGCTAGTTATCATGTTGTTTA TGGTGGCCAGATGGATGAAGATGCTGTATTTAGCAATTGCAGGAATGCTATCAGTTCCCTTGAGAAAGTTGATAAGGAGATCGGTGGTGATTTTAATTCA GGGCAATTCCATGGAGCTGCATTTGTGGAAGAGCTGCAGGGGCAGCATGCTATTTTGAGGGGCAGCATCGAACAACTGACAGCCATTGAATCATCAAGGG CAAGTCTAGTGTCTTATTTGAGAGAAGCTCTACAGGAGCAGGAATCCAAGCTGGAACAAGTCCGTCATCAGCTTCAGGCTGCACATTCCCATTCAGAACA TGCTAGTCGCATCACCCAACAGTTGTTGCATTCTAACAATGTTCCATTAGTGGCTGAGCAAAGTCCAAAGGAAGCTAACACCTCCATGGTACCTCCAAGC TTTGTAGCTGGAGACAGGGAACAATCAGCTCCATCCATGTACACCCAGCAGGTATCTTTTCCTGAAAACACCAGCCATGTTGAGGAAGATCCCCGGAAGT CTGCTGCAGCTGCTGTGGCAGAAAAATTAACTGCTTCAACATCCTCAGCCCAAATGCTTTCTTATGTCTTGTCTTCTCTTGCATCTGAAGGTGTCATTGG CAATTCAAAAAAAGAATCTTCTAGTGATTACCCTGCTGAAAAACGGGCTAAGCTCGACAAAGATCAGCCTTATATACCAACTCAGAACCCTTCACATCTT CAAACTCCCACTTTCCAGCATCCCGAGTCTTTCCAGCAGAATGTTGCAAGCAGTACCCAGCAGTCAACTCCAAACAACCCACCACCTCCCCCATCATCTC CTCCACCAGTACCCCCACCATTGCCACCTATGCAACCATATTCCATGCCCCAGTTCATGCAGACTGCTGGGTCAATAAATGGTGTACAGTACAGCTATGC CATGTCGCAGCTACAACCACCTTCTTTGGCTGGGTATCCATCAGCTGGAGCTCCAATGACCGGCATGGCCCCCTTTACAATGCCTCCAGCTAATACGTAT CCAAGTTATCAGGGTTCAGATGGTAATTTGTACACCCAACCATCATCCATGCCAATGGCACCAATTTCCCGGCAATAG
AA sequence Show only first row Show all	>Potri.001G325700.2 pacid=42787535 polypeptide=Potri.001G325700.2.p locus=Potri.001G325700 ID=Potri.001G325700.2.v4.1 annot-version=v4.1 MGSSFNPQIFVEKLAKLNSTQASIETLSHWCIFHMNKAKQVVETWARQFHSSPRDRRLAFLYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDEF GRNNAQRLIGIWEERKVFGSRGQILKEELVGKQVENNNRNGKHIGTKMKQPTGSTIDKIVASYHVVYGGQMDEDAVFSNCRNAISSLEKVDKEIGGDFNS GQFHGAAFVEELQGQHAILRGSIEQLTAIESSRASLVSYLREALQEQESKLEQVRHQLQAAHSHSEHASRITQQLLHSNNVPLVAEQSPKEANTSMVPPS FVAGDREQSAPSMYTQQVSFPENTSHVEEDPRKSAAAAVAEKLTASTSSAQMLSYVLSSLASEGVIGNSKKESSSDYPAEKRAKLDKDQPYIPTQNPSHL QTPTFQHPESFQQNVASSTQQSTPNNPPPPPSSPPPVPPPLPPMQPYSMPQFMQTAGSINGVQYSYAMSQLQPPSLAGYPSAGAPMTGMAPFTMPPANTY PSYQGSDGNLYTQPSSMPMAPISRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26990			ENTH/VHS family protein (.1)		Potri.001G325700 [exp]	0	1
					Potri.002G208200 [exp]	1.41	0.9258
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	2.23	0.9047
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	3.46	0.9170
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.018G002000 [exp]	5.00	0.8558
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	5.74	0.8828
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	6.00	0.9118
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	9.16	0.8525
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	9.79	0.8907	APG9.1
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	11.22	0.8995	ELF5.2
AT2G39950			unknown protein		Potri.008G064500 [exp]	13.60	0.8456

Compare expression of checked genes

Potri.001G325700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.