Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04900 66 / 9e-13 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 66 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 62 / 4e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 62 / 5e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT3G05220 61 / 3e-10 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G30473 53 / 5e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 51 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 50 / 8e-07 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 44 / 4e-05 Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 43 / 4e-05 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G126600 [exp] 98 / 5e-24 AT3G04900 70 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G144200 [exp] 67 / 1e-12 AT3G04900 58 / 7e-10 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 62 / 1e-10 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G175800 [exp] 59 / 4e-10 AT3G06130 81 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G140600 [exp] 59 / 5e-10 AT5G19090 81 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.005G036300 [exp] 58 / 2e-09 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.013G025300 [exp] 55 / 2e-08 AT3G06130 96 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G366600 [exp] 52 / 1e-07 AT3G13140 79 / 2e-18 hydroxyproline-rich glycoprotein family protein (.1) Potri.010G024700 [exp] 50 / 4e-07 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041228 [exp] 61 / 3e-10 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10031514 [exp] 59 / 8e-10 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 59 / 2e-09 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10029942 [exp] 58 / 2e-09 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10019789 [exp] 43 / 7e-05 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 43 / 7e-05 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10019676 [exp] 42 / 9e-05 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 42 / 0.0001 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10008284 [exp] 42 / 0.0002 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 41 / 0.0004 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G326100.1 pacid=42793513 polypeptide=Potri.001G326100.1.p locus=Potri.001G326100 ID=Potri.001G326100.1.v4.1 annot-version=v4.1 ATGGAAAAGAAAAATGCGTTTGCCCCTAAAATTCACCATGGCCATGCTCCGAGGTTTTATTTGAAAGTGAATATTCAGTGTTGTTCAGCCTGTCCTAGGA GGGCGAAGGAAAAGTTGGAGAAATTCTCTGGAGTGCTTGCAATCACCATTGATACAGAACAAGGTTTGGTAGCTGTTACAGGCACAATAGACCCTCAAAT AGTTATACAGAAATTTGCAAGGTGGGGCAAAAAAGCAGTGCTTTGCTCCCCCGAAAAGGACCCTGTCAAAGGAGACTCATCAGACTGTTCTTGCTGTGAC GATGACTCCGATTCTGAATGCGACTGTGATCGAAATTACGATGAAAAAGTATCTAAAAGCCAGAATATTGGTACTACTGGGGCCCAACCTCCAATTGTTT CTAGCACCAAAAAGAGAAAGAAACTTTGCTGGCTTTTGGGTTTGTTTAGTAAATTGCAGGATGCTGCTAAACCCAAATTGCCTCATGGTGCTCCTCCAGT TTTCAGGCCCAACAACACGCAGGCTCCTGGCAATGTGTTTTCTCTAGGAATGTCTGCTATGCCTTACGGAGGTTCAAGACCACAGTTCCCACCATGTTGG GAGAGGCCACAGTATGGAAGTCAAATTCATGGACCAACTGTGTACGGAAGTCCAGCTATGCTACCATATCCACATTATATTCAGCCAACGTACCCACCAC CACCAGTACTTCAGCCACCTGGTTTTTTTCAATCAAGACCTCCACCACAGTATAGGCCCATTATCCATTATTCCAGATATGAAGACAACTATGTTTAA
AA sequence Show only first row Show all	>Potri.001G326100.1 pacid=42793513 polypeptide=Potri.001G326100.1.p locus=Potri.001G326100 ID=Potri.001G326100.1.v4.1 annot-version=v4.1 MEKKNAFAPKIHHGHAPRFYLKVNIQCCSACPRRAKEKLEKFSGVLAITIDTEQGLVAVTGTIDPQIVIQKFARWGKKAVLCSPEKDPVKGDSSDCSCCD DDSDSECDCDRNYDEKVSKSQNIGTTGAQPPIVSSTKKRKKLCWLLGLFSKLQDAAKPKLPHGAPPVFRPNNTQAPGNVFSLGMSAMPYGGSRPQFPPCW ERPQYGSQIHGPTVYGSPAMLPYPHYIQPTYPPPPVLQPPGFFQSRPPPQYRPIIHYSRYEDNYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04900			Heavy metal transport/detoxifi...		Potri.001G326100 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050400 [exp]	5.00	0.7778
AT5G53820			Late embryogenesis abundant pr...		Potri.004G106350 [exp]	5.91	0.7467
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.007G079700 [exp]	12.48	0.6926
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.016G003300 [exp]	13.00	0.6678	FML10
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.009G089000 [exp]	16.91	0.7094
AT2G31335			unknown protein		Potri.019G012603 [exp]	17.94	0.6397
AT2G22440			unknown protein		Potri.001G266504 [exp]	17.97	0.6043
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.001G023200 [exp]	39.16	0.5877
					Potri.010G058050 [exp]	40.64	0.5877
					Potri.019G126901 [exp]	42.07	0.5877

Compare expression of checked genes

Potri.001G326100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.