Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 677 / 0 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 549 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G48720 535 / 0 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 266 / 7e-85 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G03390 261 / 2e-82 HXXXD-type acyl-transferase family protein (.1) AT1G27620 244 / 4e-76 HXXXD-type acyl-transferase family protein (.1) AT1G65450 235 / 1e-72 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G17540 211 / 4e-63 HXXXD-type acyl-transferase family protein (.1) AT3G03480 210 / 7e-63 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT2G19070 202 / 5e-60 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G068500 [exp] 723 / 0 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 702 / 0 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 400 / 4e-137 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G042900 [exp] 275 / 3e-88 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.002G032200 [exp] 269 / 2e-85 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G183900 [exp] 264 / 8e-84 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G157100 [exp] 259 / 2e-81 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 258 / 2e-81 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G158400 [exp] 258 / 6e-81 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012552 [exp] 678 / 0 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 664 / 0 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 662 / 0 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 463 / 9e-162 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 468 / 1e-161 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 455 / 2e-158 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 443 / 1e-153 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 438 / 2e-151 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 436 / 4e-151 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 382 / 1e-129 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G326300.1 pacid=42789623 polypeptide=Potri.001G326300.1.p locus=Potri.001G326300 ID=Potri.001G326300.1.v4.1 annot-version=v4.1 ATGGGTATAGAGGCTGAAAAGTTTTCTGCAATGGAGTACTCTAATGGCAATGTATTTCAACTAGTTGTGAAACAAGGAGAGCCAACTCTTGTTCCTCCAG CCGAGGAGACAGAGAAGGGTCTTTACTTTCTCTCCAACCTTGACCAAAACATTGCAGTGATTGTGCGTACAATCTACTGCTTCAAGTCAGAAGAGAAAGG AAATGAAAATGCTGGAGAAGTGATCAAGAATGCCTTGAAAAAGGTTCTTGTGCACTACTATCCTCTTGCCGGGCGGCTAACAATAAGCTCAGAGGCAAAG CTTATTATAAATTGCACTGGAGAAGGTGCTGTTTTTGTTGAGGCTGAAGCAAACTGTGCACTGGAAGAGATTGGTGACATAACAAAGCCCGATCCAGACA CTCTTGGGAAGCTGGTTTATGACATTCCTGGTGCAAAGAACATACTGGAGATGCCTCCTTTGGTGGCTCAGGTCACCAAGTTCACATGTGGAGGATTTGC ACTAGGATTGTGCATGAATCATTGTATGTTCGATGGCATTGGTGCTATGGAATTTGTGAACTCATGGGGTGAAACAGCCAGAGGCTTGCCACTCTGTGTC CCTCCATTCATTGACAGAAGCATACTTAAAGCCCGGAACCCTCCAAAGATTGAGTACCCCCACCAAGAATTCGCCGAGATAAAAGACAAGTCCAGCACAA ATGACCTTTACAAAGATGAAATGCTCTACAGCTCCTTCTGTTTCGATTCTGAAATGCTTGAAAAGATCAAAATGAAAGCCATGGAAGATGGGGTTCTTGG AAAGTGCACTACTTTTGAAGGGCTCTCAGCTTTTGTATGGAGAGCTCGAACCAAGGCACTCAAAATGCTGCCTGATCAACAAACAAAGCTCCTATTTGCT GTCGATGGAAGGCCAAAATTTAAACCCCCCCTACCAAAAGGGTACTTCGGAAATGGAATTGTGTTGACCAATTCGATGTGCCAAGCAGGGGAACTACTAG ACAGGCCACTATCACATGCAGTGGGGCTTGTTCAAGATGCAATTAAAATGGTCACAGACAGTTACATGAGATCTGCTATGGATTATTTTGAAGCAACAAG AGTTAGGCCTTCTCTGGCTTCGACTCTACTGATAACAACTTGGTCTAGGCTATCTTTCTACACTACAGATTTTGGGTGGGGAGAGCCAGTTCTATCTGGG CCAGTGGCATTACCAGAGAAGGAAGTCATCCTGTTCCTATCTCATGGCAAAGAGAGAAAAAGCATAAATGTGCTTCTGGGTCTGCCAGCTTTAGCCATGA AGACCTTCCAAGAAATGATACAGATTTAG
AA sequence Show only first row Show all	>Potri.001G326300.1 pacid=42789623 polypeptide=Potri.001G326300.1.p locus=Potri.001G326300 ID=Potri.001G326300.1.v4.1 annot-version=v4.1 MGIEAEKFSAMEYSNGNVFQLVVKQGEPTLVPPAEETEKGLYFLSNLDQNIAVIVRTIYCFKSEEKGNENAGEVIKNALKKVLVHYYPLAGRLTISSEAK LIINCTGEGAVFVEAEANCALEEIGDITKPDPDTLGKLVYDIPGAKNILEMPPLVAQVTKFTCGGFALGLCMNHCMFDGIGAMEFVNSWGETARGLPLCV PPFIDRSILKARNPPKIEYPHQEFAEIKDKSSTNDLYKDEMLYSSFCFDSEMLEKIKMKAMEDGVLGKCTTFEGLSAFVWRARTKALKMLPDQQTKLLFA VDGRPKFKPPLPKGYFGNGIVLTNSMCQAGELLDRPLSHAVGLVQDAIKMVTDSYMRSAMDYFEATRVRPSLASTLLITTWSRLSFYTTDFGWGEPVLSG PVALPEKEVILFLSHGKERKSINVLLGLPALAMKTFQEMIQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.001G326300 [exp]	0	1
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	1.73	0.9768
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	2.64	0.9795
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	2.82	0.9788
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	5.29	0.9735	3
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	5.91	0.9728
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	6.24	0.9601	MYB101.1
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	7.48	0.9683	CYP86A19,Pt-CYP86.4
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	7.74	0.9704
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	7.93	0.9678
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	9.16	0.9690

Compare expression of checked genes

Potri.001G326300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.