Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT3G62870 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G08180 40 / 0.0004 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101000 [exp] 389 / 3e-138 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113800 [exp] 389 / 5e-138 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 388 / 7e-138 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 368 / 2e-129 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.008G110100 [exp] 42 / 0.0001 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009322 [exp] 387 / 2e-137 AT3G62870 458 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035650 [exp] 387 / 3e-137 AT3G62870 461 / 1e-166 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010763 [exp] 385 / 7e-137 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10012463 [exp] 385 / 8e-137 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10015841 [exp] 388 / 1e-136 AT3G62870 460 / 4e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035632 [exp] 384 / 8e-136 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010745 [exp] 382 / 1e-134 AT3G62870 452 / 1e-162 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10020500 [exp] 379 / 6e-124 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10004366 [exp] 41 / 0.0002 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10040161 [exp] 41 / 0.0003 AT5G08180 226 / 4e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [poplar] [flax] PELOTA PF01248 [poplar] [flax] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Potri.001G326400.1 pacid=42792039 polypeptide=Potri.001G326400.1.p locus=Potri.001G326400 ID=Potri.001G326400.1.v4.1 annot-version=v4.1 ATGGCACCAAAGCGAGGTGGAAAGGGTCCGGTGGTTGCCGGAAAGAAGAAACCGGAGAAGGTGCCGAATCCATTGTTCGAGAAGAGGCCGAAGCAGTTTG GAATTGGAGGGGCTTTGCCACCAAAGAGGGATCTGAGCCGATTCGTTAAGATGCCGAAGATGGTTCAGATTCAGAGGCAGAGGAGGATTCTCAAGATGAG ATTGAAGGTTCCACCTACCGTGAACCAGTTCACCAAGACCCTTGACAAGAATCTCGCATCAAACTTGTTCAAGATGCTTTTGAAGTACCGTCCTGAAGAC AAAGCAGCAAAGAAGGAGCGCCTCTTGAGAAAGGCTCAGGCAGAGACCGAAGGAAAAACTGTTGAGGCTAAGAAGCCTATTGTTGTGAAATATGGTCTCA ACCATGTAACCTATCTAATCGAGCAGAAAAAAGCCCAGTTGGTTGTTATTGCTCATGATGTGGACCCCATTGAGTTGGTTGTATGGCTACCAGCATTGTG CAGGAAGATGGAAATCCCATACTGCATTGTGAAGGGAAAATCTCGATTGGGAGCAATTGTCCACAAGAAGACTGCATCAGTTTTGTGCTTGACCACAGTC AAGAATGAAGACAAGTTGGAGTTCAGCAGAATCTTGGAAGCTATCAAGGCTAACTTCAATGACAAGTACGATGAGTACAGGAAGAAGTGGGGTGGTGGAA TCATGGGTTCCAAATCCCAGGCCAAGAGCAAGGCCAAAGACAAGGTCCTTGCCAAAGAAGCTGCCCAGAGGATGACCTAG
AA sequence Show only first row Show all	>Potri.001G326400.1 pacid=42792039 polypeptide=Potri.001G326400.1.p locus=Potri.001G326400 ID=Potri.001G326400.1.v4.1 annot-version=v4.1 MAPKRGGKGPVVAGKKKPEKVPNPLFEKRPKQFGIGGALPPKRDLSRFVKMPKMVQIQRQRRILKMRLKVPPTVNQFTKTLDKNLASNLFKMLLKYRPED KAAKKERLLRKAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQKKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGAIVHKKTASVLCLTTV KNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKSKAKDKVLAKEAAQRMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47610			Ribosomal protein L7Ae/L30e/S1...		Potri.001G326400 [exp]	0	1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.001G025300 [exp]	3.60	0.9434	Pt-UBI.5
AT1G01100			60S acidic ribosomal protein f...		Potri.015G004700 [exp]	7.54	0.9357
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	11.22	0.9418	RPL15.3
AT4G13170			Ribosomal protein L13 family p...		Potri.002G242600 [exp]	15.23	0.9332	Pt-RPL13.3
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.016G082300 [exp]	16.09	0.9311
AT2G27710			60S acidic ribosomal protein f...		Potri.004G185800 [exp]	18.33	0.9328
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.008G156300 [exp]	21.56	0.9329	RS3.2
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077200 [exp]	22.44	0.9308	UBQ1.3
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.002G119600 [exp]	22.62	0.9118
AT4G25740			RNA binding Plectin/S10 domain...		Potri.005G040100 [exp]	22.97	0.9280

Compare expression of checked genes

Potri.001G326400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.