Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24300 296 / 4e-81 GYF domain-containing protein (.1.2) AT1G27430 287 / 3e-78 GYF domain-containing protein (.1) AT5G42950 106 / 2e-22 GYF domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326700 [exp] 1544 / 0 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 1181 / 0 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.002G262300 [exp] 99 / 2e-20 AT5G42950 714 / 0.0 GYF domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032021 [exp] 588 / 0 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10035191 [exp] 586 / 0 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10003139 [exp] 422 / 1e-122 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10011331 [exp] 322 / 3e-89 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10012078 [exp] 119 / 1e-26 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1) Lus10032720 [exp] 113 / 1e-24 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10035192 [exp] 79 / 3e-16 AT1G27430 59 / 2e-10 GYF domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.001G326500.2 pacid=42787988 polypeptide=Potri.001G326500.2.p locus=Potri.001G326500 ID=Potri.001G326500.2.v4.1 annot-version=v4.1 ATGACTGACGGAAAGCCGAATCTCCCTGACGATCTCCTCCTCCTCTCTTGCAAGTCAACCGATGAACGCCTCTCCTCCTTCAAAGATCGTGGAGGAATTG GTGAGGACAAGGCTCTGTTGAGTTTGCCTGATGACTCAAAAGATCAAGTGACTGCAGACAACACTATACCTCTTTCTCCACAATGGCTTTATGCTAAACC GGTGGATGCTAAGTCATCAATTACTGGGGCATCAGGGGAAACACGTGCTTCAAATTCTTTGTCCCATGGAAACTCCAGTGATAGCAATTTGAAAGACAAT TGGCGTTTAGATGGATCCCAAGACAAGAAAGATTGGAGGAGGATTGCTCCTGATGTTGAAAGCAGCCGCCGTTGGCGTGAGGAGGAGAGGGATACAGGTT TGCTTGGTAGAAAAGATCGCAGAAAAGAAGACCATCGTGCTGATTCTGTTTCAGCTAGAGATATATCTGAGACTAGAACTTTGCCTTCTTCAGATCGTTG GCATGACGGCAACAACCGCAATTCTGCTCATGAATCCCGAAGAGACAGCAAGTGGTCATCTAGGTGGGGTCCTGAAGAGAAAGAGAAGGATTCTCGAAAT GATAAGAGGGCAGATGTTGAGAAGGATGAGGCTCACAGCGACAAACAAAATTTTGGCACTTCTAGCCGCCCAACTTCCGAGCGTGAGAACGATTCTCGCG ATAAGTGGAGGCCATCTTCTGAGCGTGAGAATGACTCCCGTGATAAGTGGAGGCCTCGCCATCGTATGGAAGTTCATTCTGGTGGACCCGCTGCTTACAG GAGTGCACCTGGATTTGGGTCAGATAGAGGACGTGTGGAGAGCCCGAATGTGCCGTTTGCTGCCGGAAGAGGAAGGTCCAACAATAGTGGGAACTTACAA ATTGGCAGGCATCTTACTGCTTCTTCCATCGGGTCCATTCCTGTGGATAAGAATCATGTATTCTGCTATCCGAGGGGAAAACTTCTTGACATTTACCGTA AGCACAAGACTCTTCCAAGTTTTGATACCATACCAGATGGGATGGAGCTTGTGTCTCCACTAACACAGGAAATTGCTATTAAGCCATTGGCTTTTGTTGC ACCTGATGCAGAGCAAGAGGCTGTCCTTGGAGATATATGGCTGGGAAAAATTACAAGCAGTGGAGGATTGAACAACTCATTTAGAGAGAAGAACGAGTCA TCAAATAATAACACTGCAGGCATTGGTGAGGAGAATGTGAGTTTCTCTGTTAAGACTGAAGAAATTGCAGACTCTTTTGGAAAAATTACTGGCAATGCTT CTGGTCAAGGTACGGGTGCTGAAACGTTCAATGCATCAATGGCTGAGGAAAAGGATACGCATAAAGATGATAAACAGAAGTGTGTGACAACAATTGGCAG AGCGTTGATGGATGGCTTTGTGCCTGCAGTTTTCAAGAGAGACGAATCCAGCAGTGTTGGGGAGAGTGGCCTGATTGACAACGTTGTGGATTTAAAAGCT TTTGAAAGGCAGCCAGTGGCAGATGTGGCTTTTCAGAATAACCTTAAGTTGGAGGATATTGAGTCAGCTACTTCTTTTGAAATTGGTAGCCAGCTCCCTG ATGATTCAAGTTCACTATTTGATTTTTCTTCTGCACAGCAAAATTCAAGAAGCCATCAATTTTCGTTGAATATAAATAATGATGGGCATCAATTCACGGG TACTTTCATGCCTGAGGAACTATCATTGTGCTATCTTGATCCTCAAGGGGCAATTCAGGGACCGTACCTTGGTATTGATATTATTGCATGGTTTGAGCAA GGATATTTTGGAACTGACCTACCAGTTCGTTTGTCAGATGCTCCCGATGGATCACCCTTCCATGAACTTGGTGATATTATGCCTCACCTAAAACTTAAAC CCGGGTGTGCTTCAAGTACTAGTCCGTCTGCTAAGGTACAACTATCTGATGATGTTGGAGAAAGCTTGGAAGGGAGCACAGCGACTTCTGCTTCTCTTGA ATATAAGGTTTCTGCTGTCAGGGAAGACCAGCAGCGGGTTTCATCTGGATTTGAGGCCATCTCCAATGTTAGTGGTCAGTCAAGAGTTCCTGATCATGGT TTTCTCGGTGGGATGGAGTATTCTGATGATCAAAGATTTCAAAATGTTGTTACTCCGGATGAAGAAATCGTCTTTCCTGGAAGGCCTGGAAGTAGTGGCA ACCCTTTGATGAGAGATGTTGCAGACGTTCATCGATTTGGTCCTAATCCTTCTACCAACCCTGCCATCTTAAATGAATTTTCAGAAGCTGGCATGCATAC TCATCAGGATGAAATAGTTCATCCGTTTGGCTTGTCAATGTCCGAGCTCAGTAGCAACTCTAATCTTAGGCGTGCTCAATCATCCAACATGGCTTCTGGC ATGGGTGATGAATTTCCAGTGCAGGTTCATGCTATGGACTCTTATACAGAGCATGATGCTGCCCTTGCCAGTCACAGGTCCTTTGATGCAGTATTTGATC AATCCCATTATGCAGAGACATGGCCTGAAGATTATAGGAAAAAGCCACTCACTAATCCTCACATCGATCTAAGTTCCGCAGATGCTCGACACTTATTTCA CAGGCAGCCAGAGTTCAATGATTTTGACCAGCAGCATCTCATGTTGCAGAAGATGCAAAAAGAATGTCAACAACAGAATCATTTATCTCATCCCTTCTCA CATACTATGGAACTGGGTTTTGAGCAAATCCCTTCTAATCTTATTGAACTGCAATTTCAACGTCAGCAGCAGTTGGAGTTTCAACGTCAGCAGCAGCTGG AGCTTCGACAGCGTCAGCAGCAGCTGGAGCTTCAACATCAGCAGCAGCTGGAGCTTCAACAGCGTCGGCAGCTGGAACTTCAACAGCGGCGACAGGTGGA GCTTCAGCAACAGCAGCGACAGTTTGAGCTTCAGCAACAGCATCATTTACTGCACCAACAGCAACAACAGCTTCGTCAGTACCAAATGAAACTGCAGCAG CAGCAGGTTCTGGAACAGTTGCTGCAGCATCAGATGCCTGATCTTGGATATGGGCAGGGAAAGGGAGATCCATTGAGAGAAAACTTGCTTGAGCAGATTC AATTTAGGACACGACTGGCGGCCGAACTGCAGCAGAATTCACATAATCCAAGGCACCTCGATCTAACACTGGAGCAGATAATTCGAGCTAAGATTGGCCA GAATAATCTTCAAGAACCCCAGACTGATATCTTGGACCTTTTATCACAGGTGAAGCATGGTAATATACTCCCTTCAGACCTGCAGTTCCATCTTCAGCAA GAACAGATGCAGGCGCAAGAGTTATCTTTGGCAAGGCAACAGTTAGGAATTGATGGTGAAAGGCAAGTTGGTTGGCCATGGTCCAATGATGAAGCTGGTC AGACCTTCAGAAATACTACTGGTCATCACCAGTCTAAGTCTACAGGATTTAGCGCTTCAGATTTTTACCTGCAACAGCAGAGGCTTTCCTCACATGATGA ACATTTAAGCCATAACAAATGGAATCATGCTCTACAGGAGCCACATCAGGGTGGGTTTTATGAGCCCAGCTCTATGGCATTTGACCATCCAACTTCTCTG CCTGCTGTCACTCCTGGGATGAAGATGGATAATGTAAGTGGTCATTCCCAAGGTCCAGATTCAGCAGAGCATCTATATATGCATTCTACTGATCAACCGG GTTCCTTCTCGTCCAATGTCTCTTCTCGTCATAGACAAGTTTTTGGTGATATTTATGGTTCTCGCGCCGAAATGACAGAGAGCCACCTCCCTGGAAAACA AGGGCAGCAAGAGAATAGTTGGGTTGAAGGAGGGATGCAACAATTGCATCTTGAAGCTGAAAGAAAAAGGAATGTTTCAGAAGTTGCTGGAAACTCTAGT TTTTGGACCTCAGCTCGCGGAGATGAGGAGAGCTCAAAGCAAGTTTTAGCGGATCTTCACCAAAATATGGGTCTTCAGTCTATTCGGTCATCGGAAGACG ATTATCGGAACCTTATATCTTCTTCTAAATCTCAGGAATCCTTTTGGCCAATCACTGAGTCGTTCTCTTTAAATGATATTCCAGATCAAGAAGCCACCAT GAATGACTCATTTATGGAAAAGCCTCAAAATTTGAAATCAAATTCTCTGCTGCAGGATAATCATGCTATGTCCTTGAGTGGTCAATTACACCATCAAGGA AATGGTGAAAGATTGTCCCTAAGGTCGAAATCTGGAGCACTAACTGAAGAACCAACTTTCTTTTCAGGCATAGTAGATACTTCTCATACTAATCATGTGG ATAACATGTTTGTTGATAAATCTGCCATGGATAAAGAATTGGCAGAATTGGATAACAGATATGGGTCCAAAGGCATGACTGCCATGGCCAGGTCTGTTTC GCACATTGAAGAGAACTTTGTTGAACAAGCTGAAACTGCTATGGATTTTGCTAATGCCAGTAGCAGGCAGAGTAGCAGGCATAGTTCCCTGAGCAGTGCT GGTGGTAATGGAGGCCTACACGGGTATGAGATGGGATTAGATAAATTGACGGGTGAAGAGGTCTCTATTGACAGGATGCCTTCTATTTTAACTAGAGGGC TTGACAGTGCCTTGCATAAACGCCCGCCGGTATCACGGGCCTATTCTTCCAAGGATGTGTCGTCGGACATGGCATCTTCTTCGCATATCAAGCAAAGAAA TCGGGCAAGCCTTGCAACTTCTGATGAAAGGAGGAGTGAGCCTGTAGAGAATGTAGCAGCAACCCGGGGAGGTGACAGTCAGACATCTGGCAAGAAAGAA GCGCATTTTAGGAGGTCCTCATCTTACAATGATGCTGGTATAACAGAGACATCATTTATGGATGTGCTAAAGAAGCCAGTTTTTACCGAGGCTGAAGCAG CTAATGCGGCTGCCTTGGAATCATCTGATGGTCCACTGAGTGGGCGAAGCGGGAAAAAGAAAGGGAAGAAAGGAAGGCAAATTGATCCTGCTCTCCTTGG CTTCAAGGTTTCTAGCAATCGCATTATGATGGGTGAGATACAACATCCTTACGAGTAA
AA sequence Show only first row Show all	>Potri.001G326500.2 pacid=42787988 polypeptide=Potri.001G326500.2.p locus=Potri.001G326500 ID=Potri.001G326500.2.v4.1 annot-version=v4.1 MTDGKPNLPDDLLLLSCKSTDERLSSFKDRGGIGEDKALLSLPDDSKDQVTADNTIPLSPQWLYAKPVDAKSSITGASGETRASNSLSHGNSSDSNLKDN WRLDGSQDKKDWRRIAPDVESSRRWREEERDTGLLGRKDRRKEDHRADSVSARDISETRTLPSSDRWHDGNNRNSAHESRRDSKWSSRWGPEEKEKDSRN DKRADVEKDEAHSDKQNFGTSSRPTSERENDSRDKWRPSSERENDSRDKWRPRHRMEVHSGGPAAYRSAPGFGSDRGRVESPNVPFAAGRGRSNNSGNLQ IGRHLTASSIGSIPVDKNHVFCYPRGKLLDIYRKHKTLPSFDTIPDGMELVSPLTQEIAIKPLAFVAPDAEQEAVLGDIWLGKITSSGGLNNSFREKNES SNNNTAGIGEENVSFSVKTEEIADSFGKITGNASGQGTGAETFNASMAEEKDTHKDDKQKCVTTIGRALMDGFVPAVFKRDESSSVGESGLIDNVVDLKA FERQPVADVAFQNNLKLEDIESATSFEIGSQLPDDSSSLFDFSSAQQNSRSHQFSLNINNDGHQFTGTFMPEELSLCYLDPQGAIQGPYLGIDIIAWFEQ GYFGTDLPVRLSDAPDGSPFHELGDIMPHLKLKPGCASSTSPSAKVQLSDDVGESLEGSTATSASLEYKVSAVREDQQRVSSGFEAISNVSGQSRVPDHG FLGGMEYSDDQRFQNVVTPDEEIVFPGRPGSSGNPLMRDVADVHRFGPNPSTNPAILNEFSEAGMHTHQDEIVHPFGLSMSELSSNSNLRRAQSSNMASG MGDEFPVQVHAMDSYTEHDAALASHRSFDAVFDQSHYAETWPEDYRKKPLTNPHIDLSSADARHLFHRQPEFNDFDQQHLMLQKMQKECQQQNHLSHPFS HTMELGFEQIPSNLIELQFQRQQQLEFQRQQQLELRQRQQQLELQHQQQLELQQRRQLELQQRRQVELQQQQRQFELQQQHHLLHQQQQQLRQYQMKLQQ QQVLEQLLQHQMPDLGYGQGKGDPLRENLLEQIQFRTRLAAELQQNSHNPRHLDLTLEQIIRAKIGQNNLQEPQTDILDLLSQVKHGNILPSDLQFHLQQ EQMQAQELSLARQQLGIDGERQVGWPWSNDEAGQTFRNTTGHHQSKSTGFSASDFYLQQQRLSSHDEHLSHNKWNHALQEPHQGGFYEPSSMAFDHPTSL PAVTPGMKMDNVSGHSQGPDSAEHLYMHSTDQPGSFSSNVSSRHRQVFGDIYGSRAEMTESHLPGKQGQQENSWVEGGMQQLHLEAERKRNVSEVAGNSS FWTSARGDEESSKQVLADLHQNMGLQSIRSSEDDYRNLISSSKSQESFWPITESFSLNDIPDQEATMNDSFMEKPQNLKSNSLLQDNHAMSLSGQLHHQG NGERLSLRSKSGALTEEPTFFSGIVDTSHTNHVDNMFVDKSAMDKELAELDNRYGSKGMTAMARSVSHIEENFVEQAETAMDFANASSRQSSRHSSLSSA GGNGGLHGYEMGLDKLTGEEVSIDRMPSILTRGLDSALHKRPPVSRAYSSKDVSSDMASSSHIKQRNRASLATSDERRSEPVENVAATRGGDSQTSGKKE AHFRRSSSYNDAGITETSFMDVLKKPVFTEAEAANAAALESSDGPLSGRSGKKKGKKGRQIDPALLGFKVSSNRIMMGEIQHPYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	0	1
AT1G15780			unknown protein		Potri.003G012400 [exp]	1.73	0.9231
AT3G22380		TIC	time for coffee (.1.2)		Potri.010G089700 [exp]	2.82	0.9082
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	2.82	0.9149
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	5.00	0.9056
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	5.56	0.8660
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	6.00	0.8771
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	6.48	0.9019
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	7.34	0.9052	HAC901,Pt-HAC1.4
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	7.74	0.8866
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	9.00	0.8893

Compare expression of checked genes

Potri.001G326500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.