Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27000 758 / 0 ATARP2, WRM, ARP2 WURM, actin related protein 2 (.1) AT2G42100 361 / 3e-123 Actin-like ATPase superfamily protein (.1) AT5G09810 358 / 4e-122 ACT2/7, ACT7 actin 7 (.1) AT3G53750 358 / 5e-122 ACT3 actin 3 (.1) AT2G37620 358 / 5e-122 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 354 / 1e-120 ACT11 actin-11 (.1) AT1G49240 354 / 2e-120 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 353 / 2e-120 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT3G46520 347 / 1e-117 ACT12 actin-12 (.1) AT5G59370 345 / 3e-117 ACT4 actin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010400 [exp] 357 / 7e-122 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 357 / 1e-121 AT5G09810 775 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 355 / 6e-121 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 355 / 8e-121 AT3G12110 765 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 354 / 1e-120 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 354 / 1e-120 AT3G12110 767 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 353 / 4e-120 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 345 / 4e-117 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 333 / 6e-112 AT5G09810 554 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006156 [exp] 769 / 0 AT3G27000 759 / 0.0 WURM, actin related protein 2 (.1) Lus10041069 [exp] 663 / 0 AT3G27000 654 / 0.0 WURM, actin related protein 2 (.1) Lus10005819 [exp] 357 / 9e-122 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 357 / 9e-122 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 357 / 9e-122 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 354 / 2e-120 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 354 / 2e-120 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 354 / 2e-120 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 353 / 5e-120 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 353 / 5e-120 AT3G12110 766 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.001G326600.4 pacid=42788659 polypeptide=Potri.001G326600.4.p locus=Potri.001G326600 ID=Potri.001G326600.4.v4.1 annot-version=v4.1 ATGGACAGTAGAAACGTCGTCGTTTGCGATAATGGCACAGGGTATGTAAAGTGTGGATTTGCTGGAGAGAATTTCCCGACGTCTGTATTCCCGTGTGTGG TTGGAAGGCCGATGCTACGCTACGAGGAATCACTAATGGAACATCAATTGAAGGATATCGTTGTTGGAGAGGCTTGTGCTGGCTTGAGGCATCAGTTAGA TATATCTTATCCTGTTAACAATGGAATCGTTCAGAACTGGGATGATATGGGTCATGTGTGGGATCATGCCTTTTATAATCAACTTAAAATAGATCCAATG GAATGTAAGATTTTACTCACAGACCCACCTCTTAATCCCTCAAAAAATCGTGAAAAAATGGTCGAGACAATGTTTGAGAAATACAATTTTGCTGGTGTCT TCATTCAAATCCAAGCTGTTTTAACATTGTATGCCCAAGGTTTACTGACTGGATTAGTTATTGATTCTGGCGATGGGGTTACTCATGTGGTTCCTGTTGT TGATGGCTATTCATTCCCTCATCTAACTAAGCGAATGAACGTAGCTGGTCGACACATTACATCCTATCTTGTTGATTTACTTTCACGAAGAGGGTATGCA ATGAATAGGACTGCTGATTTTGAGACTGTCAGGGAAATCAAAGAAAAACTCTGCTATATTAGTTATGACTACAAGAGGGAGTATCAATTGGGACTTGAGA CCACCATACTGGTTAAAAACTATACACTGCCAGATGGAAGGATCATTAAAGTAGGCACTGAAAGGTTCCAGGCCCCTGAGGCTCTTTTTACACCGGAACT CATAGATGTTGAAGGTGATGGGATGGCTGACATGGTTTTTCGCTGCATTCAAGAAATGGATATCGACAACCGTATGATGCTCTACCAGCATATAGTCTTA AGTGGAGGGAGCACCATGTATCCTGGATTACCTAGCCGGCTGGAGAAAGAAATACTGGATCGCTATCTAGATGCAGTTCTCAAGGGAAACAAGGACGGGT TAAAGAAACTTCGATTGAGGATTGAAGATCCACCACGAAGAAAGCATATGGTCTACCTTGGTGGTGCAGTTCTTGCAGGAATTATGAAGGATGCACCTGA GTTCTGGATTAGCAGAGATGATTATCTAGAAGAAGGGATGGCTTGTTTGAGTAAGTGTGGTCAGGCATAA
AA sequence Show only first row Show all	>Potri.001G326600.4 pacid=42788659 polypeptide=Potri.001G326600.4.p locus=Potri.001G326600 ID=Potri.001G326600.4.v4.1 annot-version=v4.1 MDSRNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEHQLKDIVVGEACAGLRHQLDISYPVNNGIVQNWDDMGHVWDHAFYNQLKIDPM ECKILLTDPPLNPSKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYA MNRTADFETVREIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRIIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL SGGSTMYPGLPSRLEKEILDRYLDAVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISRDDYLEEGMACLSKCGQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	0	1	Pt-ARP2.1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.004G074900 [exp]	2.44	0.9431
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	3.00	0.9530
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	3.60	0.9339
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	4.24	0.9495
					Potri.011G057400 [exp]	4.47	0.9374
AT2G32980			unknown protein		Potri.014G158000 [exp]	4.58	0.9460
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	5.29	0.9431
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	5.65	0.9299
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	6.32	0.9460
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.010G022300 [exp]	7.34	0.9417

Compare expression of checked genes

Potri.001G326600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.