Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14080 684 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 165 / 8e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 161 / 4e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 155 / 2e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G06710 157 / 9e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 149 / 8e-38 RPF2 rna processing factor 2 (.1) AT3G53700 149 / 1e-37 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 148 / 1e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 147 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 144 / 5e-36 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050500 [exp] 169 / 6e-45 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G123600 [exp] 168 / 2e-43 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 165 / 7e-43 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 164 / 3e-42 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 160 / 2e-41 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 158 / 4e-41 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 158 / 5e-41 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 158 / 1e-40 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 157 / 1e-40 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041542 [exp] 810 / 0 AT5G14080 671 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012551 [exp] 334 / 2e-109 AT5G14080 277 / 6e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 165 / 1e-42 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026747 [exp] 163 / 8e-42 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 154 / 4e-39 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 150 / 1e-37 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 147 / 9e-37 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 145 / 2e-36 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 147 / 3e-36 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 144 / 1e-35 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G326800.4 pacid=42787931 polypeptide=Potri.001G326800.4.p locus=Potri.001G326800 ID=Potri.001G326800.4.v4.1 annot-version=v4.1 ATGGCGCGCTTGGGAACGGAGTTAGCAGTTCGGATAAGCAGAGCTCTAATCACCGAGTCAAATAGCTCAATCCCGACCCGTTCATGGAATCCATTACTAG AGCAAACTCTACACAAAATCGGTTGTCGCGACTCACTGAGTCAGTCGCTCGTGGCTCGAGTCATCGACCCACATCTCTTAACTCACCACTCTCTTGCTCT GGGTTTCTTCAATTGGGCTTCTCAACAACCCGGGTTCACTCATAATTCACTTACTTACCATTCAGTACTCAAATCTCTTTCTTTCTCCCGCCAATTCAAT GCCATTGAATCACTGTTAAAGCGAGCCAAAGCTCAAAACCTGACTCTTGATTCTTCAATTTATCGATTTGTTGTTGATTCTTTGATTAAAAGAGGAAAAA CCCAGATGGCATTTTCGGTTTTTAACGAGATTAAATCACAAAGTTTAGATCTTGGGACTGAGACAAGTAACTCTCTTTTGGCTTCTTTGGGGTCTGATGG GTGTTTTAACAATGCAATGAAGGTGTTTGATGAAATGAATAACAGAGGTATTGGCTTTAGTACTATTGGGTTTGGTGTATTTATATGGAGGCTTTGTAGA AATGGCGATTTGGGTGAAGTTTTGCGCTTGGTAGATGAGGTTGAAGGGAGGAATTCCTTGATTAATGGGTCCGTTATTGCGGTTTTAATTGTTCATGGGC TTTGTGAGGGTTCAAGAACAAGCGAGGCTTTGCGGGCATTGAATGAGTTGAGAATTAGGGGGTGGAAACCTGATTTTATCGCATATAGGGTTGTTGCCGA AGCATTTAGATCGCTTGGAAGCGTGTTTGACGTGAACGAGGTTTTGAAGATGAAGAGGAAGTTAGGAGTGGCACCGAGGAGTAATGATTACAGAGAGTTT ATTTTGGGTTTGATTACTGAAAGACGGATATATGAAGCAAAAGAATTAGGCGAAGTTATCGCAAGTGGCAACTTTCCTATGGAAGACGATGTTTTGAATG CACTGATAGGATCAGTGTCGACAATTGATCCTTATTCGGCAATGAAGTTTTTTCATTTTGTTATTGGAAAAGGGAAGTTCCCAACGCTTTTAACGTTGAG TAATTTGTGTAGGAATCTATGTAAGCATGGGAAGATTGATGAGTTGTTGGAGGTATACCGTGTTTTGTCTTCTAATGAATATTTCTCTGATATGGAGAGT TACAATGTGATGTTTTCGTTCTTATGCATGGGTGGAAGAGTGAGAGAGGCTTATGAGGTGCTTCAAGAGATGAGAAAGAAAGGGTTAGACCCAGATATCT CAATGTATAATTCCCTAATTGAAGTGTTATGTAGAGAAGATCTGTTGCGTCCTGCTAAAAGGCTTTGGGATGAAATGTTTGTAATCGGATGTGGAGGGAA CTTGAAAACTTATAATATTCTCATTGGGAAATTCTCAGAAATAGGTCAAATTGAAGAGGCTACGAGGCTTTTCAATCACATGTTGGAGAAAGGGGTGACA CCTGATGCTACAACTCACAGATTCCTCCTTGAAGCCCTTTGCCAAGAAACAATGTTTGAAACTGCAGTTGATGTCTTCTACAAGCATGTGAATCACGATG TAATGCTTGCACAAAATATATTGAAGACATTGATTCTAAACCTCTGCGGAAAAGGTCACTTCCTTGTTGCTTCTAAGTTTCTGTGTGACCTCACTCATGA CGTAAGTCATTCAGATGCCCATGTGGTTTTGTTGAAATGTTTAGCTGACTCTGAAGAGGTTCCAATTGCAGTGGAACATGCAAAACAAATTCGAGGTAAC TCACCTTCAATGTTGCAAGTCATATGCACTAAGCTTTTGGCCTTTTCTTCTTCTTCTTCAAACCCAGAGCCTATTTTGCACTTGCTTCAAGCTCTGTCAC AAGAACGTGTGATCAGTATAGATTTCGGCAATGATTCTTGGAAGCATGTATGCAGCAAATCATTGAAATGA
AA sequence Show only first row Show all	>Potri.001G326800.4 pacid=42787931 polypeptide=Potri.001G326800.4.p locus=Potri.001G326800 ID=Potri.001G326800.4.v4.1 annot-version=v4.1 MARLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTHHSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFN AIESLLKRAKAQNLTLDSSIYRFVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNRGIGFSTIGFGVFIWRLCR NGDLGEVLRLVDEVEGRNSLINGSVIAVLIVHGLCEGSRTSEALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREF ILGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFPTLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMES YNVMFSFLCMGGRVREAYEVLQEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEIGQIEEATRLFNHMLEKGVT PDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNILKTLILNLCGKGHFLVASKFLCDLTHDVSHSDAHVVLLKCLADSEEVPIAVEHAKQIRGN SPSMLQVICTKLLAFSSSSSNPEPILHLLQALSQERVISIDFGNDSWKHVCSKSLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	0	1
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	4.24	0.9112
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085500 [exp]	4.69	0.8813
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	5.47	0.8985
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	5.91	0.9149
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	6.92	0.9066
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	8.48	0.8945
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	9.16	0.8961
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	10.95	0.9070
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	12.72	0.8643
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Potri.008G178400 [exp]	15.49	0.8371

Compare expression of checked genes

Potri.001G326800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.