Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01990 631 / 0 ACR6 ACT domain repeat 6 (.1) AT1G69040 556 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 505 / 4e-178 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 426 / 5e-147 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 390 / 3e-133 ACR8 ACT domain repeat 8 (.1) AT4G22780 387 / 9e-132 ACR7 ACT domain repeat 7 (.1) AT5G25320 367 / 4e-123 ACT-like superfamily protein (.1) AT5G65890 336 / 2e-111 ACR1 ACT domain repeat 1 (.1.2) AT5G04740 64 / 4e-11 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G16880 62 / 1e-10 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138600 [exp] 576 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 569 / 0 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 568 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 545 / 0 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 525 / 0 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 517 / 0 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 462 / 2e-161 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 447 / 1e-155 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 446 / 6e-155 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012550 [exp] 749 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 745 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 545 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 461 / 7e-161 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 450 / 2e-156 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 427 / 2e-147 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 424 / 2e-143 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 362 / 4e-121 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 321 / 4e-108 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 258 / 4e-82 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.001G327000.2 pacid=42791038 polypeptide=Potri.001G327000.2.p locus=Potri.001G327000 ID=Potri.001G327000.2.v4.1 annot-version=v4.1 ATGGATGAAGAGTATGCTAAGCTAATCAGGAGATTGAACCCACCAAGAGTTGTGATTGACAATGATGCTTGTGAGGAAGCCACTGTTATCCAGGTTGATA GTGTTAACAAGCATGGAATACTCCTCAAAGTTGTACAAGTGCTTACGGATATGAACCTTGTGATAACAAAAGCATACATATCATCTGACGGGGATTGGTT TATGGATGTGTTTAATGTGGTCGACCAAGATGGGAAGAAAATCAGAGATAAGGAAGTTATGGATTATATTCAACGAAGACTTGAAAGCAATGCGAGCTTT GCACCATCGTTGAGAGGGTCTGTTGGGGTGATGCCTTCTGAAGAGCATACTGCAATTGAGCTTACTGGTACTGACAGGCCTGGTTTATTGTCTGAAGTAT GTGCGGTTCTCACAGACCTCCACTGCAATGTGGTAAATGCTGAGATATGGACTCATAACACTAGGGCTGCTGCTGTAGTTCATGTCACAGATGATTCCAC AGGGTGTGCAATTAAAGATCCAAAACGACTCTCGACCATCAGGGAATTGCTTTGCAATGTTCTCAAGGGAAATGATGATTCGAAGACAGCAACTACGACT CTTTCACCCCCTGGGGTAACAAGTAGGGAAAGAAGATTGCATCAGATAATGTTTGCAGACAGGGACTATGAAAGAGTTGAAAGAGCAGGATTAGCGAGAT TTGAAGATAAGAGTTCAAGGCCCCATGTAACAGTGTTGAATATTGAGAGAGATTACACCGTCGTTTCTATGAGGTCAAAGGATCGTCCCAAACTATTGTT TGACATTGTTTGCACTTTAACAGACATGGAGTATGTTGTCTTTCATGGAATGGTCAGCACAGGAAGAATGGAAGCTTATCAGGAATTCTATATTCGACAT GTTGATGGACTCCCTGTAAGCTCAGATGCTGAGCGAGAACGTGTAGTACAGTGTCTTGAAGCTGCCATTGAAAGGCGAGCTTCTGAGGGACTGGAGCTGG AATTGTGCACAGAGGACCGTGTTGGACTCCTCTCAGACATTACCAGGATATTCCGAGAAAACAGTTTGTGTATTAAGAGAGCAGAAATCTTGACAAAAGG TGGTAAAGCCAAAGATACATTCTATGTCACGGACGTCACTGGTAACCCAGTCGACCCCAAGATCATCGATTCAATTTGTAGACAGATTGGACAAACCAAG CTGCTAGTAAAACGCAACTCTATTCTTTCCCCAAAGCCTCCCCAGGAAACAACAATGGGATACATCTTTGGGAACCTCTTTAAAGCTCGAACATTCAAGT TGATTAGATCCTACTCGTAA
AA sequence Show only first row Show all	>Potri.001G327000.2 pacid=42791038 polypeptide=Potri.001G327000.2.p locus=Potri.001G327000 ID=Potri.001G327000.2.v4.1 annot-version=v4.1 MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYISSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRRLESNASF APSLRGSVGVMPSEEHTAIELTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTIRELLCNVLKGNDDSKTATTT LSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSRPHVTVLNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIRH VDGLPVSSDAERERVVQCLEAAIERRASEGLELELCTEDRVGLLSDITRIFRENSLCIKRAEILTKGGKAKDTFYVTDVTGNPVDPKIIDSICRQIGQTK LLVKRNSILSPKPPQETTMGYIFGNLFKARTFKLIRSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	0	1
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	1.00	0.9265
AT3G57990			unknown protein		Potri.016G046900 [exp]	3.46	0.9127
AT3G56680			Single-stranded nucleic acid b...		Potri.008G021900 [exp]	3.46	0.8978
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	6.00	0.9026
AT2G30500			Kinase interacting (KIP1-like)...		Potri.019G131000 [exp]	6.48	0.8864
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	6.92	0.8844	LON.2
AT4G02715			unknown protein		Potri.005G211400 [exp]	8.48	0.8736
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.012G135900 [exp]	8.77	0.8973
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	10.24	0.8850
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	10.39	0.8836

Compare expression of checked genes

Potri.001G327000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.