Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14090 170 / 2e-49 unknown protein AT3G27025 41 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168700 [exp] 189 / 2e-56 AT5G14090 151 / 4e-42 unknown protein Potri.001G059100 [exp] 183 / 6e-54 AT5G14090 152 / 3e-42 unknown protein Potri.017G068276 [exp] 41 / 0.0001 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037042 [exp] 106 / 2e-25 AT5G14090 133 / 2e-35 unknown protein Lus10037689 [exp] 42 / 0.0005 AT1G72490 246 / 9e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G327500.5 pacid=42791100 polypeptide=Potri.001G327500.5.p locus=Potri.001G327500 ID=Potri.001G327500.5.v4.1 annot-version=v4.1 ATGAGGGTACTAGATTGGATGCACCACCGATCCAAAAAATCTAATGTCGAACCATTCAAGGATTTTTTGACAGGGAGCTATTGTACTTGCCTTTCCGCAC AGTCACCCATTGATGACCATGTTTCCTACACTGGGCCAAGTTTTAACTCCAGATATGGACCCAGGCTCTTAAAACAGCCAAATGAGGAATGTGAGAATAC TTTCTCTGAAAATGAAGGAGTGGATGAGAATAATGGAGATGAAACATCTATCATCAGCTCTGATCTTTTTCATGGCTTTCTCACTATTGGAACCCTTGGC TCAGAACCAATTACCAGTGAGCCTGCAACACCAACATTTCCCATGTCTTCGGAGAGCATAACAGAGGAAAACATAGAGGTGACAGAAAATGAATTGAAGA TCATGAACAATGAGTTAGAAAAGTTTCTAGAGGCTGAAGCTGAAGAAGAAGGTTGCAATGAATCGTTAGCAAGGAGCAGTTATGTTAGCACTATTACACT CAGTGGCATGCAAATGGAAGCAACTGATGCTGAAGATTATGGAAAGACAGTGGCATGTCCACTCCAAGGATATCTATTTGGGTCATCAGTTGAACTGCCA GAAACAAGAGTTGGAGTAAAGAAGGAAAAGGTATCACTTGGAGAGATGTTTCGTATGACAAAAGTTACAGATGAAATTCCTTCGGAAAAAGAAGTGAAAG GGGAGATGCAAGCCAAGAAAGCACATAAATCTGCCAAATACCTCATCAAGAAGATACTCGGAATGTTTTGCACTACGTCAGGAAATCCTACCCCTTCTAC TAGTGACGAAGCCTCAAATTCTGTTTCTACCAAGAAAACACTTAATAAGGTCCTAAAAGTGTTCCATAGAAAAGTTCATCCTGAAAACCCATTAGCTGAA AGAGAGTTTACGAAGTCCCATAAAGACAAGACAATGAATACTCTGAATGATGGTGGCTATAATGCAGAATTGACGAACCAGGTTAAAGAGAAAAGAAAGT TTCTTCCTGGATACAAGTCAAGGGAAGGGGTCCAATGCCATAAGAACAGCTTGAAACTGCCCCAACATGATCATATTTGCAGTAATTCAAGTGCAAATGG GGAATACTGGATTAAAACAGATGCGGACTATTTGGTGCTGGAGCTGTAG
AA sequence Show only first row Show all	>Potri.001G327500.5 pacid=42791100 polypeptide=Potri.001G327500.5.p locus=Potri.001G327500 ID=Potri.001G327500.5.v4.1 annot-version=v4.1 MRVLDWMHHRSKKSNVEPFKDFLTGSYCTCLSAQSPIDDHVSYTGPSFNSRYGPRLLKQPNEECENTFSENEGVDENNGDETSIISSDLFHGFLTIGTLG SEPITSEPATPTFPMSSESITEENIEVTENELKIMNNELEKFLEAEAEEEGCNESLARSSYVSTITLSGMQMEATDAEDYGKTVACPLQGYLFGSSVELP ETRVGVKKEKVSLGEMFRMTKVTDEIPSEKEVKGEMQAKKAHKSAKYLIKKILGMFCTTSGNPTPSTSDEASNSVSTKKTLNKVLKVFHRKVHPENPLAE REFTKSHKDKTMNTLNDGGYNAELTNQVKEKRKFLPGYKSREGVQCHKNSLKLPQHDHICSNSSANGEYWIKTDADYLVLEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14090			unknown protein		Potri.001G327500 [exp]	0	1
AT5G54860			Major facilitator superfamily ...		Potri.011G137400 [exp]	5.47	0.8650
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	7.54	0.8882
					Potri.003G128400 [exp]	10.39	0.8041
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	13.41	0.8362
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	18.76	0.8574
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	24.00	0.8670	DHQD3
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	25.69	0.8509
					Potri.010G076425 [exp]	36.02	0.8275
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	39.10	0.8502
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	39.30	0.8415

Compare expression of checked genes

Potri.001G327500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.