Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01930 870 / 0 Major facilitator superfamily protein (.1.2) AT5G14120 862 / 0 Major facilitator superfamily protein (.1) AT5G50520 522 / 0 Major facilitator superfamily protein (.1) AT5G50630 522 / 0 Major facilitator superfamily protein (.1) AT2G28120 334 / 3e-107 Major facilitator superfamily protein (.1) AT2G39210 323 / 6e-103 Major facilitator superfamily protein (.1) AT4G34950 317 / 6e-101 Major facilitator superfamily protein (.1) AT1G80530 291 / 6e-91 Major facilitator superfamily protein (.1) AT2G34350 270 / 2e-83 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G74780 269 / 1e-82 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064201 [exp] 1021 / 0 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 738 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 341 / 3e-110 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 328 / 5e-105 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 327 / 2e-104 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 322 / 1e-102 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 317 / 1e-100 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 314 / 7e-100 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 312 / 2e-98 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035203 [exp] 874 / 0 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 872 / 0 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 637 / 0 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 573 / 0 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 322 / 3e-102 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 319 / 2e-101 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 317 / 2e-100 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 315 / 1e-99 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 309 / 2e-97 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 304 / 7e-96 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.001G329100.1 pacid=42791297 polypeptide=Potri.001G329100.1.p locus=Potri.001G329100 ID=Potri.001G329100.1.v4.1 annot-version=v4.1 ATGGGCAAATTACATGAAAGATTTGCTGGGTTTATCAATAATAGATGGCTAGTTTTTGTGGCTGCAATGTGGATACAATCTTGTGCAGGGATTGGTTATT TATTTGGTAGCATATCACCAGTTATAAAGAGTTCTTTGAACTATAATCAAAGGCAGCTTGCAAGTTTAGGTGTGGCTAAAGATCTTGGTGATAGTGTTGG TTTCTTGGCTGGTAGCTTATCAGAAATCTTGCCTTTATGGGGTGCTTTGTTAGTTGGTGCTGTGCAGAATCTTGTTGGATATGGTTGGGTTTGGCTTGTG GTAACAGGCAGAGCTCCTGTTTTGCCTCTATGGGCTATGTGCATTCTTATATTTATAGGGAACAATGGTGAAACCTACTTCAACACAGCTGCTCTAGTTT CTTGCGTGCAAAACTTTCCAAAAAGCCGTGGCCCTGTTGTGGGAATTCTAAAAGGCTTTGCTGGATTAAGTGGTGCAATTTTGACCCAAATATATGCAAC GATCCATTCCCCTGATCACGCATCTCTCATTTTTATGGTTGCGGTTGGGCCAGCAATGGTAGTCATTGCTTTGATGTTCATCGTCAGACCTGTTGGAGGT CACAGACAAGTCAGACCATCTGATGGCACAAGTTTCACATTTGTATATGGTGTCTGTCTTCTACTGGCTGCATATTTAATGGGGGTTATGCTTCTTGAAG ATCTAGTTGATTTGAGTCACACCGTGGTTATAATTTTTACAGTAGTTTTATTCGTCCTCCTCTTGATTCCTATTGTGATTCCAGTGTCATTGAGTTTTTT CCTTGATCCAAGAGATCCAGTAGAAGAGCCTCTTCTACCTGAGACACCGAAACAAGAACCTGGAAAATCTGGGCAGGAGACTCCTGAGGTAATATTCAGT GAGGTTGAAGATGAAAAACCCAAGGAAGTAGACTTGCTACCAGCATCAGAGAGGCAAAAACGGATTGCACAGTTGCAAGCAAAACTGTTCCAAGCAGCTG CAGAAGGAGCAGTGAGGGTCAAGAGGAGGAGAGGTCCACACAGGGGCGAGGATTTCACCTTGATGCAAGCATTGATCAAGGCAGACTTCTGGCTTATTTT TTTCTCACTTTTATTGGGATCTGGATCTGGACTGACAGTGATTGATAATCTTGGTCAGATGAGCCAGTCTCTAGGGTATGATAATACACATATATTTGTG TCCATGATTAGCATTTGGAACTTCCTTGGCCGTGTTGGCGGGGGTTACTTCTCTGAGATTATTGTCAGGGACTATGCTTATCCAAGGCCAGTGGCAATGG CCATTGCCCAACTTGTCATGGCAGTTGGGCATGTCTTCTTCGCATATGGATGGCCCGGGGCATTGCACATTGGTACTCTGCTGATTGGACTCGGCTACGG GGCTCATTGGGCAATTGTGCCAGCTGCTGCCTCAGAGTTGTTTGGTTTGAAAAAATTTGGGGCTTTGTACAATTTCCTCACTCTGGCAAATCCAGCAGGT TCACTTGTCTTTTCCGGTCTAATTGCTAGCAGCATATATGATCGTGAAGCTGAAAAGCAAGCTCATGGAAACAATTACCTCGTTCAGAACTCAGGGTCAA TTTTTTCAGGCATGTTGGGTCCGAATGAACCGCTAAAGTGTGAAGGTTCCATATGCTACTTCCTTACTTCTCTGATCATGTCAGCATTTTGCGTTGTCGC GTTTGTCTTAAGCACGATTCTAGTGTATCGGACAAAGATTGTCTACGCAAACCTCTATGGAAAATCACGGAGTTGA
AA sequence Show only first row Show all	>Potri.001G329100.1 pacid=42791297 polypeptide=Potri.001G329100.1.p locus=Potri.001G329100 ID=Potri.001G329100.1.v4.1 annot-version=v4.1 MGKLHERFAGFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQRQLASLGVAKDLGDSVGFLAGSLSEILPLWGALLVGAVQNLVGYGWVWLV VTGRAPVLPLWAMCILIFIGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYATIHSPDHASLIFMVAVGPAMVVIALMFIVRPVGG HRQVRPSDGTSFTFVYGVCLLLAAYLMGVMLLEDLVDLSHTVVIIFTVVLFVLLLIPIVIPVSLSFFLDPRDPVEEPLLPETPKQEPGKSGQETPEVIFS EVEDEKPKEVDLLPASERQKRIAQLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFV SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAIAQLVMAVGHVFFAYGWPGALHIGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG SLVFSGLIASSIYDREAEKQAHGNNYLVQNSGSIFSGMLGPNEPLKCEGSICYFLTSLIMSAFCVVAFVLSTILVYRTKIVYANLYGKSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	4.89	0.8741
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	9.16	0.8661
AT5G27550			P-loop containing nucleoside t...		Potri.005G030271 [exp]	12.04	0.8866
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	18.16	0.8601
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	20.12	0.8706
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G074300 [exp]	24.28	0.8247
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058500 [exp]	24.81	0.8778
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	31.46	0.8620
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Potri.006G183200 [exp]	34.27	0.8750	BRS1.2
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.015G074600 [exp]	34.89	0.8134

Compare expression of checked genes

Potri.001G329100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.