Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37530 392 / 2e-137 Peroxidase superfamily protein (.1.2) AT5G14130 388 / 1e-135 Peroxidase superfamily protein (.1) AT5G67400 386 / 6e-135 RHS19 root hair specific 19 (.1) AT3G49960 379 / 3e-132 Peroxidase superfamily protein (.1) AT4G30170 375 / 7e-131 Peroxidase family protein (.1) AT4G37520 375 / 1e-130 Peroxidase superfamily protein (.1.2) AT2G18980 371 / 4e-129 Peroxidase superfamily protein (.1) AT4G17690 275 / 3e-91 Peroxidase superfamily protein (.1) AT5G40150 263 / 1e-86 Peroxidase superfamily protein (.1) AT5G47000 263 / 1e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064100 [exp] 548 / 0 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.018G089900 [exp] 400 / 3e-140 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 390 / 3e-136 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.007G074700 [exp] 293 / 2e-98 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 268 / 2e-88 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 266 / 1e-87 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 263 / 2e-86 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 261 / 1e-85 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 259 / 3e-85 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012540 [exp] 449 / 2e-159 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10032035 [exp] 436 / 2e-154 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10011079 [exp] 386 / 1e-134 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 377 / 3e-131 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10035204 [exp] 318 / 1e-108 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10010716 [exp] 275 / 4e-91 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10039445 [exp] 263 / 1e-86 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10027163 [exp] 256 / 8e-84 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10013955 [exp] 259 / 1e-83 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10027405 [exp] 253 / 2e-82 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G329200.1 pacid=42789300 polypeptide=Potri.001G329200.1.p locus=Potri.001G329200 ID=Potri.001G329200.1.v4.1 annot-version=v4.1 ATGGAGAGAGGACGTTGCATGCTCTTGCTGATGATGGTTTTGATCATGGACATAGGTAGGGGAGAGGGACAGCTAGTAGAAGACTTCTACAGCTTTACTT GTCCTAACGTGGAAGCTCTAGTGAAGAAGGCAGTTTCCACAAAGTTTAACCAGACATTCACTACAATCCCAGCAACTCTTCGTCTGTTTTTTCATGATTG CTTTGTTACGGGTTGTGATGCTTCAACAATGGTTTCTTCACCAAATGGAGACGCAGAGAAGGATGCTCCAGATAATCTCTCTCTGGCAGGGGATGGATTT GATACAGTAGTGAAGGCAAAGCAAAAAGTCGAAGGAGCTTGCCCCGGAGTAGTCTCCTGTGCAGACATTTTGGCTATAGCTGCTAGGGATGTCGTAGTCC TGGCTGGAGGTCCTTCATTCAATGTAGAATTAGGACGTCGTGATGGCCTGGTTTCAAAAGCATCACTTGTGAAAGGAAACTTGCCAGAACCTGGCTTCAA TCTTTCTCAACTTAACGCTATGTTTGCGAGAAACAACCTTAGCCAGATTGATATGATTGCACTATCAGGAGCCCACACGCTAGGCTTCTCTCATTGCAGC CGCTTTGCGAATCGGCTCTACTCATTCTCCTCGTCCTCTCCTGTTGACCCTTCTCTAAATCAAGATTATGCCAAGCAGTTGATGGATGGATGTCCTAGAA ATGTAGACCCCAGCATAGCCATTAACATGGACCCTGTAACCCCACAAACCTTTGACAATGTGTATTTCCAGAATTTGGTTAATGGTAAGGGATTGTTCAC TTCAGATGAGGTGCTGTTTACGGATCCAGCTTCCCAGCCAACTGTCAAAGATTTTGCTAATAGCTCGAGCGATTTTAATGGAGCTTTTGCCACTGCCATG AGAAAGCTTGGAAGGGTGCGAGTTAAGACAGGTAGCCAAGGAAGTATCAGGACAGACTGTACAGTCATTAATTCATGA
AA sequence Show only first row Show all	>Potri.001G329200.1 pacid=42789300 polypeptide=Potri.001G329200.1.p locus=Potri.001G329200 ID=Potri.001G329200.1.v4.1 annot-version=v4.1 MERGRCMLLLMMVLIMDIGRGEGQLVEDFYSFTCPNVEALVKKAVSTKFNQTFTTIPATLRLFFHDCFVTGCDASTMVSSPNGDAEKDAPDNLSLAGDGF DTVVKAKQKVEGACPGVVSCADILAIAARDVVVLAGGPSFNVELGRRDGLVSKASLVKGNLPEPGFNLSQLNAMFARNNLSQIDMIALSGAHTLGFSHCS RFANRLYSFSSSSPVDPSLNQDYAKQLMDGCPRNVDPSIAINMDPVTPQTFDNVYFQNLVNGKGLFTSDEVLFTDPASQPTVKDFANSSSDFNGAFATAM RKLGRVRVKTGSQGSIRTDCTVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37530			Peroxidase superfamily protein...		Potri.001G329200 [exp]	0	1
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.006G176800 [exp]	1.41	0.9275
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	3.16	0.8842
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	4.24	0.8975
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	5.29	0.8560
AT1G32928			unknown protein		Potri.011G151600 [exp]	5.29	0.8186
					Potri.006G037801 [exp]	5.47	0.8817
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	5.65	0.8454
AT2G35215			unknown protein		Potri.001G142250 [exp]	6.00	0.8429
AT5G24580			Heavy metal transport/detoxifi...		Potri.015G003900 [exp]	7.41	0.8251
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.002G072800 [exp]	7.93	0.7899

Compare expression of checked genes

Potri.001G329200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.