Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14140 311 / 2e-107 C2H2ZnF zinc ion binding;nucleic acid binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032036 [exp] 288 / 3e-97 AT5G14140 289 / 5e-97 zinc ion binding;nucleic acid binding;zinc ion binding (.1) Lus10035205 [exp] 265 / 2e-89 AT5G14140 267 / 4e-90 zinc ion binding;nucleic acid binding;zinc ion binding (.1) Lus10000130 [exp] 206 / 5e-67 AT5G14140 216 / 9e-71 zinc ion binding;nucleic acid binding;zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G329300.2 pacid=42790435 polypeptide=Potri.001G329300.2.p locus=Potri.001G329300 ID=Potri.001G329300.2.v4.1 annot-version=v4.1 ATGGCGATGCTTGTAGATATAGACACCAAAACCGAGTTAGGGTTTCCGTACTGGAAACCGATTCGTCGTCGTTTTGACCCCGAATCTCCTTTCTTCTCTT CTGGCAACATCGAGAGAGAACTCCTCGCCAAACAGGTTGCGTTAGATTTAAGTGAAGATGAAAAGCATAGGCTGCAGGATTTGATAGACGAGGATGGAAG GGAGGTGGTTTGTCCGATTGTTGGTTGTGGTGCACACTTGATATCCTTGGAACACTTTGAAGATCATTATAATGGACGGCACACTGCGTCGTGTTCGGTT TGCTCCAGATTTTACCCAACGTCGCTCCTGCTCAGCATTCATGTGTCTGAAGCACATGACTCTTTCTTTCAGGCAAAAGTTGCACGCGGTTATGCCATGT ATGAATGTCTGGTGGAAGGTTGTGGTTTAAAATTCAAGAATTACAAGGGTAGGCAACAGCATCTGGTAGATAAACACAAGTTCCCTAGTTCATTTGAATT CTTCAAGAAAGCCCACCTATCCAAGAAAGCAAGACAGAAGCAACATCGCAAACAAGCTATTCATAGAAGCGAGGAAACTTCCAGCAAAATGGACATAGAA GGCGAAACCATTGATGGCCTTGTTTCAGCAGTATCTAAGTTAAGCACTTCAGATTCCTCTCCTTCTTCAATCAGCTTTGGCCACCGCAACACTCGTGGCC TCACATTTGTCCCTCGAGCGGTTCAGCGAGAGAAAAGGGCAGATTCTGTGCCAACAGGAGGGAAGCAATAG
AA sequence Show only first row Show all	>Potri.001G329300.2 pacid=42790435 polypeptide=Potri.001G329300.2.p locus=Potri.001G329300 ID=Potri.001G329300.2.v4.1 annot-version=v4.1 MAMLVDIDTKTELGFPYWKPIRRRFDPESPFFSSGNIERELLAKQVALDLSEDEKHRLQDLIDEDGREVVCPIVGCGAHLISLEHFEDHYNGRHTASCSV CSRFYPTSLLLSIHVSEAHDSFFQAKVARGYAMYECLVEGCGLKFKNYKGRQQHLVDKHKFPSSFEFFKKAHLSKKARQKQHRKQAIHRSEETSSKMDIE GETIDGLVSAVSKLSTSDSSPSSISFGHRNTRGLTFVPRAVQREKRADSVPTGGKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Potri.001G329300 [exp]	0	1
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	1.00	0.8650
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.006G250000 [exp]	2.00	0.8238
AT5G25450			Cytochrome bd ubiquinol oxidas...		Potri.018G031400 [exp]	6.70	0.8223
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	7.21	0.7999
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	9.48	0.7765
AT1G27330			Ribosome associated membrane p...		Potri.001G057300 [exp]	18.33	0.7129
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.002G212600 [exp]	21.72	0.7434	MBD911
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	25.41	0.7046
AT5G58110			chaperone binding;ATPase activ...		Potri.006G080900 [exp]	26.55	0.7965
					Potri.001G400401 [exp]	26.98	0.7335

Compare expression of checked genes

Potri.001G329300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.