Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL27.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40950 253 / 1e-86 RPL27 ribosomal protein large subunit 27 (.1) AT2G16930 97 / 1e-25 Ribosomal protein L27 family protein (.1.2.3) AT5G15220 97 / 2e-25 Ribosomal protein L27 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009500 [exp] 96 / 2e-25 AT5G15220 201 / 2e-67 Ribosomal protein L27 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012538 [exp] 221 / 1e-73 AT5G40950 243 / 2e-82 ribosomal protein large subunit 27 (.1) Lus10041553 [exp] 218 / 1e-72 AT5G40950 241 / 2e-81 ribosomal protein large subunit 27 (.1) Lus10007170 [exp] 99 / 2e-26 AT5G15220 190 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10010822 [exp] 98 / 3e-26 AT5G15220 191 / 3e-63 Ribosomal protein L27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01016 [poplar] [flax] Ribosomal_L27 Ribosomal L27 protein
Representative CDS sequence Show only first row Show all	>Potri.001G329500.1 pacid=42792738 polypeptide=Potri.001G329500.1.p locus=Potri.001G329500 ID=Potri.001G329500.1.v4.1 annot-version=v4.1 ATGGCAGTCAGCTTCAATCTAATTGGTTCATTCAAAGGCCTTTCTTTATCTTCAAGCTCTTCATCTTCCTTCTTCAAAGGAGATGTTGGGTCCCTTAAAT TTGGTTTGAAAAGCTCTGCTTTGTTGCCGTTTAAGGCTCCGGTGAAGGCTCCATTACCCTTGACGATTCAAATGGCTCACAAGAAGGGAGCTGGGAGTAC CAAGAACGGCCGTGATTCTAAAGGCAAACGGCTTGGTGTCAAGATTTATGGTGACCAAGCAGCTAAACCTGGCGCAATTATTGTAAGGCAGCGTGGTACC AAGTTTCATCCAGGGAAGAATGTGGGGATTGGCAAGGATCACACCATCTTTTCTTTGATTGATGGATTGGTGAAATTTGAGAAATTTGGGCCTGACAGAA AAAAGATTAGTGTGTACCCAAGAGAAATCCAGCCCGAGAATCCCAACAGCTATCGAGCAAGAAAGAGAGAGAACTTCAGGTTGCAGCGTGAACGCAAAAA GGCAAGAAAGGAAGGTATCGTTGCTCAGCCACAGCTAGTACTTGCCTCCAATGTTGATGCTGCAGATAGCAACCCAGTTTGCTGA
AA sequence Show only first row Show all	>Potri.001G329500.1 pacid=42792738 polypeptide=Potri.001G329500.1.p locus=Potri.001G329500 ID=Potri.001G329500.1.v4.1 annot-version=v4.1 MAVSFNLIGSFKGLSLSSSSSSSFFKGDVGSLKFGLKSSALLPFKAPVKAPLPLTIQMAHKKGAGSTKNGRDSKGKRLGVKIYGDQAAKPGAIIVRQRGT KFHPGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIQPENPNSYRARKRENFRLQRERKKARKEGIVAQPQLVLASNVDAADSNPVC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	0	1	Pt-RPL27.5
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.016G072100 [exp]	1.00	0.9876	Pt-BAS1.2,PtrcPrx2-cysA
AT1G56190			Phosphoglycerate kinase family...		Potri.008G084500 [exp]	1.73	0.9861
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	2.82	0.9859	gdcH3,Pt-GDCH.3
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	3.46	0.9854
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	3.74	0.9841
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Potri.016G027600 [exp]	4.24	0.9762
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	5.00	0.9856
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	5.74	0.9809
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.001G471900 [exp]	6.32	0.9827	Pt-PSAG.1
AT4G28660		PSB28	photosystem II reaction center...		Potri.002G256400 [exp]	7.07	0.9738

Compare expression of checked genes

Potri.001G329500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.