Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27060 557 / 0 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) AT3G23580 517 / 0 RNR2A ribonucleotide reductase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063900 [exp] 661 / 0 AT3G27060 561 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.008G201500 [exp] 518 / 0 AT3G23580 576 / 0.0 ribonucleotide reductase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035209 [exp] 602 / 0 AT3G27060 562 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10032043 [exp] 596 / 0 AT3G27060 559 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10004435 [exp] 519 / 0 AT3G23580 556 / 0.0 ribonucleotide reductase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF00268 [poplar] [flax] Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence Show only first row Show all	>Potri.001G329700.1 pacid=42791769 polypeptide=Potri.001G329700.1.p locus=Potri.001G329700 ID=Potri.001G329700.1.v4.1 annot-version=v4.1 ATGCCTGCAATCCCAGAAGAGCCCCTCCTCGCTGAAAACCCAGACCGCTTCTGTATGTTCCCAATTCAATATCCATCAATCTGGGAGATGTACAAGAAAG CTGAAGCCTCATTTTGGACGGCTGAAGAGGTCGATCTCTCTTCAGATGTCGGTCACTGGGAAAACCTGACTCCTGACGAGAAACACTTCATTTCTCACGT CCTTGCCTTCTTCGCCGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGGCGTTTCATGAAAGAAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGG TTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACTGAGAAGAACCGCCTGTTTCATGCCA TTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAGTGGGCTTTACGGTGGATCGACGGAGGCGAGAGTTTTGCGGAGAGGTTAATTGCTTTTGCTTGCGT GGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAACGTGGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGA GATGAAGGGCTTCATTGTGATTTCGCGTGTCTCCTTTACAGCCTGTTGAGGAAGAAGCTGAGTGAGGAGCGCGTGAAGGGGATAGTGAAGGAAGCTGTGG ATATAGAGAGGGAGTTTGTGGTGGACTCGCTACCATGCGCGTTGGTGGGGATGAATGGGGAGTTGATGAGTCAGTATATTGAGTTTGTAGCTGATAGGCT GTTGGGTGCGCTTGGGTGCGGGAAGGTGTACAATGTGGCTAATCCATTTGATTGGATGGAGTTGATATCCTTGCAAGGGAAGACAAATTTCTTCGAGAAG AGAGTCGGAGAGTATCAAAAGGCTTCAGTTATGTCTAGTATTAATGGGAATGGTGACAATCATGTGTTCAAGATGGATGAGGATTTTTAG
AA sequence Show only first row Show all	>Potri.001G329700.1 pacid=42791769 polypeptide=Potri.001G329700.1.p locus=Potri.001G329700 ID=Potri.001G329700.1.v4.1 annot-version=v4.1 MPAIPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWENLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYG FQIAIENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDGGESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISR DEGLHCDFACLLYSLLRKKLSEERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVANPFDWMELISLQGKTNFFEK RVGEYQKASVMSSINGNGDNHVFKMDEDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	0	1
AT2G43990			unknown protein		Potri.007G145400 [exp]	2.44	0.8620
AT5G65360			Histone superfamily protein (....		Potri.003G210100 [exp]	2.44	0.8655	HTR902
AT5G02560		HTA12	histone H2A 12 (.1.2)		Potri.006G082300 [exp]	5.91	0.8128
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.019G040000 [exp]	6.48	0.8535
AT2G07170			ARM repeat superfamily protein...		Potri.006G079500 [exp]	8.83	0.8213
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	11.40	0.8387
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.010G001300 [exp]	12.60	0.7362
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	15.09	0.7715
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	15.23	0.8435
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	15.55	0.7695

Compare expression of checked genes

Potri.001G329700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.