Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 64 / 2e-11 MADS MADS-box transcription factor family protein (.1) AT5G58890 56 / 1e-08 MADS AGL82 AGAMOUS-like 82 (.1) AT3G18650 50 / 1e-06 MADS AGL103 AGAMOUS-like 103 (.1) AT4G11250 46 / 3e-05 MADS AGL52 AGAMOUS-like 52 (.1) AT4G02235 45 / 3e-05 MADS AGL51 AGAMOUS-like 51 (.1) AT5G48670 45 / 5e-05 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G27070 44 / 0.0001 MADS AGL53 AGAMOUS-like 53 (.1) AT5G26950 43 / 0.0002 MADS AGL93 AGAMOUS-like 93 (.1) AT5G27944 42 / 0.0002 MADS MADS-box transcription factor family protein (.1) AT3G05860 42 / 0.0002 MADS MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 291 / 1e-95 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 280 / 9e-92 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 114 / 1e-28 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.005G002400 [exp] 44 / 0.0001 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 44 / 0.0002 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 42 / 0.0004 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.015G077800 [exp] 42 / 0.0005 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.013G001700 [exp] 42 / 0.0005 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.004G222200 [exp] 41 / 0.001 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007371 [exp] 119 / 1e-30 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10020789 [exp] 108 / 2e-26 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10019819 [exp] 107 / 5e-26 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10014095 [exp] 107 / 6e-26 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10032108 [exp] 50 / 1e-06 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10022325 [exp] 44 / 8e-05 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.001G329800.1 pacid=42791024 polypeptide=Potri.001G329800.1.p locus=Potri.001G329800 ID=Potri.001G329800.1.v4.1 annot-version=v4.1 ATGGTTAATGAAAGAATCAAAATGGAATCGATAAGGAATGAAAAATCTCGCATGCTTACCTTCAGGAAAAGGAAGACGACTTTGCTAAAAAAGGTTTCAG ATTTCTCTATTCTTTGTGGTGTTGATGCATGCGTAATTATCTTTGGGCCAAATCAGAATGATCAACCAGCTGCCACTGCTGAGACCTGGCCTTCAAATTC CGATGAAGTCAGATGTATTATCAACAGGTACAAGGCATGTGATCAGCCAAGAAAATGTTACCGGGGCTCGGACTATTTTACTGCCAAGAAGAAGAAGATA GATGCAGAGTTCGCCAAATTGCACAGGCAAGTTCTTAAAGCTAAATATCCTGCGTGGGATGACCGTCTGAGCAGTTTATCTAGCGATCAACTAAGGGTAC TTCTCGGTCAATTGGATACTAAATTAATTGAAACTGCTGATAAAACACTCAGTATATTCAAAGAATATCAGTATGTGATGGATAATGATGCATCATGGAT GCAGGCTAGTTCTCACGACGTACAAAAGTGCAGGAAGAGAAACGGTAACAACAATGATAATATGGATTCTACTGATTTCTTGCAGCTTGTTTCGAATTGG AAGTCATTCGAAGCCCAGCCGCCTATCCCTTTCCAGCCTGAGATGAGTTCTCCCATGGCTAAACTTGATGCAAATTCATTGAATCAGAGGACCTATAACA ATGGCTATTCAACTCTTTACTCCGAACCAAAGGCATTGAATGTTTTGCCGCCAGTTCATTATGAATCTAAGCAGAGTGCTTATAGGACTCCATCACAAAC AAATATAACTGAGGATGCGATGATGAAGATAATGAGCTATCAGAGCCATAACAACTCATTTGGTTGCCAGGCTAGTAGCAGTAACAATCAACACCTCTCA TGCAATGGACCTCTTTATGTCAACCCTGCACCTTGGGCGTGGTTTAATAATGCCGATTCTTCAGTGAGATCCGTTGCCTCAACCATGCAGCCGATGCAGC CATACAAGCAATTTCCAATGACAAGTTTTCCTCAACAGTCGCTCTTTTCTGAAATCAATGAATTCAATGGTAATGCTGAATTTGAGAGAAGGGATTAA
AA sequence Show only first row Show all	>Potri.001G329800.1 pacid=42791024 polypeptide=Potri.001G329800.1.p locus=Potri.001G329800 ID=Potri.001G329800.1.v4.1 annot-version=v4.1 MVNERIKMESIRNEKSRMLTFRKRKTTLLKKVSDFSILCGVDACVIIFGPNQNDQPAATAETWPSNSDEVRCIINRYKACDQPRKCYRGSDYFTAKKKKI DAEFAKLHRQVLKAKYPAWDDRLSSLSSDQLRVLLGQLDTKLIETADKTLSIFKEYQYVMDNDASWMQASSHDVQKCRKRNGNNNDNMDSTDFLQLVSNW KSFEAQPPIPFQPEMSSPMAKLDANSLNQRTYNNGYSTLYSEPKALNVLPPVHYESKQSAYRTPSQTNITEDAMMKIMSYQSHNNSFGCQASSSNNQHLS CNGPLYVNPAPWAWFNNADSSVRSVASTMQPMQPYKQFPMTSFPQQSLFSEINEFNGNAEFERRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G329800 [exp]	0	1
AT5G56200	C2H2ZnF		C2H2 type zinc finger transcri...		Potri.001G224600 [exp]	3.46	0.8431
AT4G10190			F-box and associated interacti...		Potri.015G013500 [exp]	8.48	0.8815
					Potri.010G096850 [exp]	18.60	0.8529
					Potri.010G152501 [exp]	22.67	0.6590
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	24.67	0.8464	GAPDH.2
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	26.60	0.6745	ABI3.1
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	27.38	0.7579
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	31.78	0.8259
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	33.40	0.8143
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	38.10	0.7528

Compare expression of checked genes

Potri.001G329800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.