Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60550 550 / 0 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G16210 111 / 2e-28 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT4G16800 101 / 1e-24 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 69 / 5e-13 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G29010 57 / 7e-09 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT5G65940 56 / 1e-08 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 54 / 4e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 50 / 9e-07 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G06860 46 / 3e-05 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153300 [exp] 105 / 9e-26 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G146400 [exp] 99 / 5e-24 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.008G104500 [exp] 95 / 3e-22 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G061000 [exp] 86 / 3e-19 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G080800 [exp] 69 / 6e-13 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.010G170200 [exp] 67 / 4e-12 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 64 / 2e-11 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 64 / 2e-11 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 63 / 6e-11 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029142 [exp] 543 / 0 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10013023 [exp] 539 / 0 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10016920 [exp] 101 / 8e-25 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10010994 [exp] 95 / 1e-21 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10037777 [exp] 79 / 4e-16 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10016919 [exp] 71 / 1e-14 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10011336 [exp] 70 / 2e-13 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10002583 [exp] 68 / 1e-12 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10038717 [exp] 62 / 2e-10 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10006501 [exp] 61 / 5e-10 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.001G329900.1 pacid=42791390 polypeptide=Potri.001G329900.1.p locus=Potri.001G329900 ID=Potri.001G329900.1.v4.1 annot-version=v4.1 ATGGCCCAAACATTGTCAGAGAAGGAGCTTTACTCTGTAAGGAGAAGAATGGCCTCTGTTGCCAACCATCTTATGGTACCTTCTCCTCCTACAGCTTCTA GTTCAAAATGTGACTCGGTTGAACTAGTACCCAATGCTGCTTCCATGAATGATAACTACCATAGAGTCCATGGTAATGTTTCTAATAAAGAAGTTGTTTG GAGAAATGTTGCTGCTTCTGATGGCAGTACTAAGGACTTCACTGACATTATTTATCAAAAGGCTGTTGGTGAAGGCATTGCAAAGATTGTTATTAACAGG CCAGAGAGAAGAAATGCGTTCCGGCCACGGTCGGTTAAGGAACTAATTGCTGCGTTTAATGATGCTAGGGATGATAGCTCTGTGGGGGTTATCATTCTTA CTGGCAAGGGAACCAAGGCCTTTTGTAGCGGTGGCGATCAGGCATTAAGAACCAAGGATGGCTATGCTGATCCTAATGACATGGGCCGCTTGAATGTATT AGACTTGCAGGTACAAATTCGGCGCCTTCCCAAACCAGTAATAGCAATGGTTGCAGGTTATGCTGTTGGAGGAGGACATATATTGCATATGGTCTGTGAT CTCACAATTGCAGCCGATAATGCTATATTTGGCCAGACTGGTCCTAAGGTTGGAAGCTTTGATGCAGGTTATGGAAGTTCCATCATGTCCCGTTTGGTCG GGCCTAAAAAAGCACGTGAGATGTGGTTTCTGACAAGGTTCTATACAGCTTCTGAAGCAGAGAAAATGGGCCTTGTTAACACTGTTGTACCATTAGATAA TTTAGAACAAGAAACAGTCAAATGGTGTCGAGAGATTCTAAGGAATAGCCCAACTGCGATTCGAGTCCTCAAGTCAGCTCTTAATGCTGTTGATGATGGT CATGCTGGACTCCAGGAACTTGCTGGGAATACCACACTCATATACTATGGTACTGAGGAAGGCAGCGAGGGGAAGTCGGCATTTATGGAACGTAGACCCC CGGATTTCTCAAAATTTCCACGACGACCTTAA
AA sequence Show only first row Show all	>Potri.001G329900.1 pacid=42791390 polypeptide=Potri.001G329900.1.p locus=Potri.001G329900 ID=Potri.001G329900.1.v4.1 annot-version=v4.1 MAQTLSEKELYSVRRRMASVANHLMVPSPPTASSSKCDSVELVPNAASMNDNYHRVHGNVSNKEVVWRNVAASDGSTKDFTDIIYQKAVGEGIAKIVINR PERRNAFRPRSVKELIAAFNDARDDSSVGVIILTGKGTKAFCSGGDQALRTKDGYADPNDMGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCD LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTASEAEKMGLVNTVVPLDNLEQETVKWCREILRNSPTAIRVLKSALNAVDDG HAGLQELAGNTTLIYYGTEEGSEGKSAFMERRPPDFSKFPRRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Potri.001G329900 [exp]	0	1
AT5G02160			unknown protein		Potri.006G087701 [exp]	2.23	0.9561
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	2.44	0.9523
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	3.46	0.9323
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	7.00	0.9262
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.006G258500 [exp]	7.34	0.9200
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	8.06	0.9322
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.003G015200 [exp]	9.16	0.9303	Pt-PETF.4
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Potri.004G203100 [exp]	10.72	0.8891	Pt-FTSZ2.1
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.003G000400 [exp]	11.83	0.9094
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096500 [exp]	11.95	0.9144	Pt-RALFL27.1

Compare expression of checked genes

Potri.001G329900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.