Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 492 / 3e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079000 [exp] 547 / 3e-176 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 526 / 3e-168 AT3G48200 1075 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035212 [exp] 1067 / 0 AT3G48200 476 / 3e-149 unknown protein Lus10032047 [exp] 1018 / 0 AT3G48200 457 / 2e-142 unknown protein Lus10039976 [exp] 488 / 1e-153 AT3G48200 1074 / 0.0 unknown protein Lus10008827 [exp] 447 / 9e-140 AT3G48200 925 / 0.0 unknown protein Lus10002461 [exp] 246 / 4e-72 AT3G48200 425 / 1e-139 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G330000.1 pacid=42788009 polypeptide=Potri.001G330000.1.p locus=Potri.001G330000 ID=Potri.001G330000.1.v4.1 annot-version=v4.1 ATGCTTAAATGTGAAGTGAAGTACATGGCAACTTCTGCAATTGGTTTACTCCAACTTCTCAAACTAGTTATGTGTATTGCAGTTATGATTTTGTGTGCAT TAGACTCAACTAAGTCAATAGTTATCGTTAACTTTCATCAAGCTCCTCCTGAACAATCAAGGATCTCTACTGCTGTTTTCCAGTATTCAACAGAGTTTCC AGATGGTAGCAACGCTTGCAAGAATAACAGTTGCCACATGTCCTGTGAGCTCGATGGCCGAACTTTGAGATCATGTCCTGCTGATATAATAGTATTCAAG AACTTAACTGTAAACCACAAACACAGTTTTCTTCTCAGTGTCACAACTCGTAATGGAGAGCGAAACTCATCATCTTATTCTTGGTTCATAGACACAATTC CACCAACTGCAACAATATTTAGTGAACAGAATTACACAAATGCTGGAAATATAACCATTGATGTAACATTCAGTGAAGCTTGCACCGGGTTGGGTGGATT CAAGTGTGCGAACTCATCAAATTGCGATGTCATTTTGAATGGTCCAGCATATCTTCATGCTTCTTCTCTACACATCATCAAACCTAATATAAAATACAGA CTTGACTTGACTCTCTCCTTGAAAAGTTTACGTGGCCGCATCTTAGTCAGAATGGCAGATAATTTTTGTACAGATAAGGCTGGAAACTCTTTTACAAGGA CAAACAGTTCCTCTTTAATTATTCACTTTGATAGAAGACCAGTGCTGGTAGATTTGTGGATGCCAGTTCCATCCTATGTAATGGAGATCAATGGGGTCCC AAGAACTGTTCTGGCAACTAACAAAATTGGGGACATGAAAATTTGTTTGGACTTCAGCATTCCCATTGGAAATTCAACAGAAGAAGTCCTAAATTCCTTG CACGTAAACTCAGATAATGTTTTACCTGTTCTTATTGGAAATCATTGGAATCGCAAGTTCTTTTTTGAACTCAGGAATGCATCGAAAGCTGAAACCATTA CGGTTGAACTAGATTCTGGATTAGTTGGCAGAACAGGCACTCCTGTTTCACAAGCGGCCTCACTGACAATTCTCTTTGATTCAACAAAGCCTGAGGTGAG ACTGAGCACCAGCTCACCAAATGTTACAGAGGCATCTGACATGAAGGTGATAGTAGGGTTTACGAAGCCGGTGTTTGGCTTTGCGGCCTCCATGGTACAA GTGGAAGGAGGAAAAGTTACAAGGTTTAAGGAACTTTCAAGAGCTCTATACTCGCTGACTGTCCTTGCTGTTACTCAGAATGTGGTCTCCATCACAATTC CTGCCGGGAAAGTACATGATATTTCAGGAAATCAAAATTTAGCTTCTAACCTACTTGAAGTGAAACACTATTCAACCCCGGCAATATCAATGGCATTATA CTCTTTTGTGACTTCTGGAGTAATAGCAACATCGCTGACAGCTGCTGCACTTTCACTGTCCACTGCAAATCTTGGAGCTATACGCTCTCTTGCAGCCGGA GATACTGACAATTTTGCTTCTAAACCATCTATGAATCTGCATGGATTTTTTGGACACCTTCAAGTATTTGTTCTCTCTGATTGGCTCTCTGCCAGTCATC CAATTGAGTACTCAGAGACAACAAAAGGTCTGAGGTGGCTCATACCTCGTCAAAAGCTTCCATGGAAAGATGGTGGCACTTCTATATGGCCCAACCATGT TTATTTGGCTAAAGAAAATCTCAGAATCTTATCACTTGAATATCACAATTGGTTTAATACAAATTTAAATAGTTCTTCTAATATGGAAGATCAACTTCCA TTTCAGACTGAAATCAACCTAAACTTTGGTTGGCGTCATGGATATAGTACAAGCATGAAAAGTACTCCATATGGTCTACCCCTCAATTCCAGAGAATATT TCACTTATTTCTTGAGAGGGGAACCATCATCTGCTACCAATCTCATCAAGGAAACTGAGAACTGCAAAGGGTGGCAAGACTTGGAGAAGAACTTGTTCTG GCTTGGTGTGGGAGGAGGCAGTTTACTTATAATTCATGTGCTAACATTACTTTTCCTAAGATGGAGGACAGGAGCACCAGCTCATGGGATATTTTCGGTT CCCAGGTTTGAGCTGCTACTTCTAATTCTCATGTTACCTTGTATCTCTCAGTCCTCAGCATTTGTTATGAAAGGGGGCTCACCTAGAGGAATCATCATCG GGGCTTTGTTGCTAGTAGTCCCAGGAGCACTTATTTTATTCACCATCCTTTTTCTCATAATTGCTATCTTCTCTGGGAGTTTTGCTCTGTACAAGGAAAT CAGGGATATTGCTGTAGGGGATCCATGGTATAAAAAGTTGTGGTCTGTCTTTGTTGGTAAGCAAGTAATTGGTAAATGGTTTTATAAGGAGGGGTTGCCC ACATCTCTCCTTCCACGCTTTGGAATTCTCTTTGAAAATCTAAGGGGTCCTCCATTATTTGTCATTGTTGATCATTGTGACCCAAACACCTTGCCTACGT GGATTGAAAGTGGTCAAAGTGGAATTGGAAGAATGAGAGCTGTGAGCTCAGATGACAGCAATGAAGAAACTAAAATGCCTTGGTCCAGGCGACTCGTGGG GTGTGCTAGATCTTCCTATGTTATTCTGGATCTTGTGAGAAGAATCGGTTTGGGAATACTATCCGGAGCATACAGATCACCAGAATCAAGTCAAAGCCTT TTAGCGTTGGCAATCACATTGATACAATTCATTTATCTGCTTACACTCAAACCATACATCAGAAGGAGAGTCCATTTGGTGGAAAGTATCTCTCTCTTAT GCGAGGCAGGCATCTTCGGTTTTTCTATTGCTACAGAAAGATCAAATCATATGGAAGAAAGCATACTCGGATACACAATGTTGGCTCTCCTCTTCCTAAC CTTCATTGTTCATATTGTAAATGAATGGTATGCATTGGTAAAATGCCTTCTAAGACTTTCTCAGCCTCGGAGGAATTCTTTCAAATTCGGATTGAAGCTT GCCGCTAAAGGTCTTGTGTTGCCTTTCCTACCAAGGAAGCACTGGTCAAAAGTTATTCCAAATTTCTCCCAACCAAAAACAGGCCTATCTGCTGTCCCTC CTCTAAGTCCAGAATCAGTAGATAGAAGAACACACCATGGTGATGCACTTAGTACTATATCTGCAACAGTGGTTCCTGTGCTCAGTCCTGGTTCGCCAAG TCTAGATGTTATTCAAGAAACAAGTTACACAACTGCAGAGACATCCCTTCATAGTGCTCAGAGCGTTGGGGAAGGAAAAGGTTCACAGGGACTAAATTTA GAGAAAAAGAGTGAACTAAAGAAACTAAGGCAGTTGGCAAGGGCTAGTTTCTCTGGGAATTCAAAAGGTCAGGAAAGCACAAGCTACGCATTTAGGGACC AATTCTTCTCTCCTAAAACCCCAGATAGTTCTCAAGCCTCCACTTCTTAG
AA sequence Show only first row Show all	>Potri.001G330000.1 pacid=42788009 polypeptide=Potri.001G330000.1.p locus=Potri.001G330000 ID=Potri.001G330000.1.v4.1 annot-version=v4.1 MLKCEVKYMATSAIGLLQLLKLVMCIAVMILCALDSTKSIVIVNFHQAPPEQSRISTAVFQYSTEFPDGSNACKNNSCHMSCELDGRTLRSCPADIIVFK NLTVNHKHSFLLSVTTRNGERNSSSYSWFIDTIPPTATIFSEQNYTNAGNITIDVTFSEACTGLGGFKCANSSNCDVILNGPAYLHASSLHIIKPNIKYR LDLTLSLKSLRGRILVRMADNFCTDKAGNSFTRTNSSSLIIHFDRRPVLVDLWMPVPSYVMEINGVPRTVLATNKIGDMKICLDFSIPIGNSTEEVLNSL HVNSDNVLPVLIGNHWNRKFFFELRNASKAETITVELDSGLVGRTGTPVSQAASLTILFDSTKPEVRLSTSSPNVTEASDMKVIVGFTKPVFGFAASMVQ VEGGKVTRFKELSRALYSLTVLAVTQNVVSITIPAGKVHDISGNQNLASNLLEVKHYSTPAISMALYSFVTSGVIATSLTAAALSLSTANLGAIRSLAAG DTDNFASKPSMNLHGFFGHLQVFVLSDWLSASHPIEYSETTKGLRWLIPRQKLPWKDGGTSIWPNHVYLAKENLRILSLEYHNWFNTNLNSSSNMEDQLP FQTEINLNFGWRHGYSTSMKSTPYGLPLNSREYFTYFLRGEPSSATNLIKETENCKGWQDLEKNLFWLGVGGGSLLIIHVLTLLFLRWRTGAPAHGIFSV PRFELLLLILMLPCISQSSAFVMKGGSPRGIIIGALLLVVPGALILFTILFLIIAIFSGSFALYKEIRDIAVGDPWYKKLWSVFVGKQVIGKWFYKEGLP TSLLPRFGILFENLRGPPLFVIVDHCDPNTLPTWIESGQSGIGRMRAVSSDDSNEETKMPWSRRLVGCARSSYVILDLVRRIGLGILSGAYRSPESSQSL LALAITLIQFIYLLTLKPYIRRRVHLVESISLLCEAGIFGFSIATERSNHMEESILGYTMLALLFLTFIVHIVNEWYALVKCLLRLSQPRRNSFKFGLKL AAKGLVLPFLPRKHWSKVIPNFSQPKTGLSAVPPLSPESVDRRTHHGDALSTISATVVPVLSPGSPSLDVIQETSYTTAETSLHSAQSVGEGKGSQGLNL EKKSELKKLRQLARASFSGNSKGQESTSYAFRDQFFSPKTPDSSQASTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48200			unknown protein		Potri.001G330000 [exp]	0	1
					Potri.001G049501 [exp]	3.46	0.9581
AT2G22590			UDP-Glycosyltransferase superf...		Potri.018G140401 [exp]	5.19	0.9460
AT5G49100			unknown protein		Potri.010G012000 [exp]	13.26	0.9435
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	15.71	0.9333
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.007G081200 [exp]	19.59	0.9218	CYP78A21v1
AT1G78260			RNA-binding (RRM/RBD/RNP motif...		Potri.002G098100 [exp]	20.00	0.8799
					Potri.008G169450 [exp]	22.95	0.9309
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.006G144400 [exp]	26.83	0.9369
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.008G121200 [exp]	27.74	0.9369
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Potri.018G109900 [exp]	28.77	0.9257	HCQL5

Compare expression of checked genes

Potri.001G330000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.