Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01920 430 / 1e-152 DHBP synthase RibB-like alpha/beta domain (.1) AT5G60590 49 / 1e-06 DHBP synthase RibB-like alpha/beta domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025500 [exp] 52 / 2e-07 AT5G60590 350 / 9e-122 DHBP synthase RibB-like alpha/beta domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032046 [exp] 426 / 6e-151 AT3G01920 385 / 4e-135 DHBP synthase RibB-like alpha/beta domain (.1) Lus10041302 [exp] 56 / 1e-08 AT5G60590 311 / 2e-106 DHBP synthase RibB-like alpha/beta domain (.1.2) Lus10037409 [exp] 56 / 1e-08 AT5G60590 314 / 7e-108 DHBP synthase RibB-like alpha/beta domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01300 [poplar] [flax] Sua5_yciO_yrdC Telomere recombination
Representative CDS sequence Show only first row Show all	>Potri.001G330100.2 pacid=42792381 polypeptide=Potri.001G330100.2.p locus=Potri.001G330100 ID=Potri.001G330100.2.v4.1 annot-version=v4.1 ATGGCGGAAACGAAACTATACGGTTACAAACTGACTCCATCACTCTCATCTCTACCCTCTTTAACAACTCTACGACGACATGTCGCTCCATTTCCAAGCC TTGTTTCCTTTAACACCCCAAAACCCCCTCGCCTCCGTGTCTTATCCATGGCTATTAAAAGAAGCCCAAAACGACTCAAGTACTCTGCTCCTCGTTTTAC CAAGGAGGACGGACTGCTTTATGTGGAAGCTGACGAGTTAGGATCTGACACGTGGAAGTTGGAACCTGTGATTGAGCTTTTGAAACAAGGAGCTGTTGGT GTTATTCCTACTGATACTGTGTATGCGATTGTTTGTGATTTGAAAAGCAACTCAGCAATTGAACGTCTTCGTAGAATTAAAAACATAGAACCTTCCAAGC CCCTTAGCATCTTGTGCCACTCTCTGAGAGACATAGATACATATACAACTGGATTCCCACGTGGTGATGGTCAAGGTCATGCAGATATATTTCGAGCCGT TAAGCATTGCTTACCAGGGCCATATACTTTCATCCTAACTGCAAGCAAAGAACTACCAAAACAGTGCGTGCGGTATGGGACTACAACTGCCAAATATGCT TCAAGGAAAAATGTGGGTATCCGAATGCCTGATGATGCTATTTGTCAAGCAATCCTAGAGAAGATGGATGCGCCGCTTATATCCACAAGTGTCAGGTCGC CAAAGGAAAACGAGTGGATGATTGATCCAGTTGTAATAGCTGATATATATGGAGCAGAGGGTCTTGATTTTGTTGTTAATGGAGGTATCAGAGTGGCTGA TCCATCTACTGTAGTTGACATGACAGGAAGTTCTCCAAAAATTATACGGCAAGGAAAGGGGCCTAAATTACACTGGATGGTAGCTGAAGATGACGATGAA TCTGCTTTTCATGTTGAAGATCTCATACCTTCTGCTACTTAA
AA sequence Show only first row Show all	>Potri.001G330100.2 pacid=42792381 polypeptide=Potri.001G330100.2.p locus=Potri.001G330100 ID=Potri.001G330100.2.v4.1 annot-version=v4.1 MAETKLYGYKLTPSLSSLPSLTTLRRHVAPFPSLVSFNTPKPPRLRVLSMAIKRSPKRLKYSAPRFTKEDGLLYVEADELGSDTWKLEPVIELLKQGAVG VIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSILCHSLRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRYGTTTAKYA SRKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGAEGLDFVVNGGIRVADPSTVVDMTGSSPKIIRQGKGPKLHWMVAEDDDE SAFHVEDLIPSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	0	1
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	3.87	0.9199
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	4.00	0.8834
AT4G18975			Pentatricopeptide repeat (PPR)...		Potri.011G076800 [exp]	10.95	0.9040
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	12.48	0.8736
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G273400 [exp]	14.07	0.8958
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	14.69	0.8736	Pt-HLS3.1
					Potri.014G179200 [exp]	16.61	0.8998
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	20.14	0.9139
AT1G56180			unknown protein		Potri.010G171400 [exp]	24.79	0.8663
AT5G57060			unknown protein		Potri.003G044400 [exp]	25.69	0.8424

Compare expression of checked genes

Potri.001G330100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.