Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27390 215 / 3e-71 TOM20-2 translocase outer membrane 20-2 (.1) AT3G27080 211 / 1e-69 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT5G40930 201 / 4e-66 TOM20-4 translocase of outer membrane 20-4 (.1) AT3G27070 172 / 1e-54 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054900 [exp] 248 / 3e-84 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 231 / 2e-77 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012532 [exp] 272 / 8e-87 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 249 / 5e-84 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 246 / 6e-83 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10011363 [exp] 184 / 7e-59 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 178 / 8e-57 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 96 / 6e-25 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF06552 [poplar] [flax] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Potri.001G330200.1 pacid=42788248 polypeptide=Potri.001G330200.1.p locus=Potri.001G330200 ID=Potri.001G330200.1.v4.1 annot-version=v4.1 ATGGAAATGCAAAACGACTTTGATAGGTTACTGTTCTTCGAGCACGCACGTAAAACAGCTGAAGATGCTTATGCTCAAGACCCTCTTGATGCCGATAATT TGTTGAAGTGGGGAGGAGCTTTATTGGAGTTGGCTCAGTTTCAGAGTGTTCCAGATTCAAAGAAGATGATGCTAGATGGAATCACGAAGCTGGAGGAGTC GTTGCTGATTAACCCCAAGAAACACGAGGCTATCTGGTACCTGGGAAATGCACATACTTCATATGCATTTTTGACAGCAGATCAAGATGTGGCTAATGAG AGTTTTGAAAAGGCAGCTGTCTACTTTCAACAAGCTGTTGATGAGGATCCAGATAATGAACTTTATCGCAAGTCTTTGGAAGTGTCTTCTAAGGCTCCAG AGTTGCACTCACAGATTCACAAGCATGGTGGCTTAGATCAACTGGAAATGGGAGCTGCCCCTGCTTCTGCAGCTTCTACTTCATCAAGTGCAAAGAGTTC TAAGAAGAAGAAAAGCAGCGATCTCACGTATGATGTATGCGGATGGGTTATTCTTGCTGTTGGCATTGTTGCTTGGATTGGATTTGCAAAATCCCAGATG CCGTCTCCTCCTACACAATAA
AA sequence Show only first row Show all	>Potri.001G330200.1 pacid=42788248 polypeptide=Potri.001G330200.1.p locus=Potri.001G330200 ID=Potri.001G330200.1.v4.1 annot-version=v4.1 MEMQNDFDRLLFFEHARKTAEDAYAQDPLDADNLLKWGGALLELAQFQSVPDSKKMMLDGITKLEESLLINPKKHEAIWYLGNAHTSYAFLTADQDVANE SFEKAAVYFQQAVDEDPDNELYRKSLEVSSKAPELHSQIHKHGGLDQLEMGAAPASAASTSSSAKSSKKKKSSDLTYDVCGWVILAVGIVAWIGFAKSQM PSPPTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G330200 [exp]	0	1
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.001G088200 [exp]	2.00	0.9388
AT2G22425			Microsomal signal peptidase 12...		Potri.008G175775 [exp]	3.16	0.9361
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	3.46	0.9419	APFI.1
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.004G071900 [exp]	4.58	0.9372
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	5.29	0.9369
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	5.47	0.9336	Pt-ANT1.1
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Potri.001G369000 [exp]	7.54	0.9242
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Potri.002G248200 [exp]	9.00	0.9294
AT2G43640			Signal recognition particle, S...		Potri.013G125200 [exp]	9.94	0.9286
AT5G05370			Cytochrome b-c1 complex, subun...		Potri.019G132000 [exp]	10.00	0.9220

Compare expression of checked genes

Potri.001G330200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.