Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 569 / 0 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 562 / 0 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 561 / 0 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 526 / 0 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64900 514 / 1e-179 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT3G03470 488 / 5e-169 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT5G61320 481 / 1e-166 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT5G04630 315 / 9e-102 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 312 / 2e-100 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G04660 307 / 2e-98 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099100 [exp] 885 / 0 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 795 / 0 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 659 / 0 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088086 [exp] 655 / 0 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 654 / 0 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.005G079600 [exp] 647 / 0 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 639 / 0 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 616 / 0 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 613 / 0 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020353 [exp] 545 / 0 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 541 / 0 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 539 / 0 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 523 / 0 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 519 / 0 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 514 / 3e-179 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 452 / 3e-155 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 341 / 1e-111 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10018351 [exp] 301 / 2e-95 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007658 [exp] 298 / 3e-95 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G330501.2 pacid=42792076 polypeptide=Potri.001G330501.2.p locus=Potri.001G330501 ID=Potri.001G330501.2.v4.1 annot-version=v4.1 ATGAATCGCTGGTTCCTCATTCTCTTGTCTATCTCCATCTCCATCTCCATCTCTGGTATACTCAAATTCATCGTCAACCGATGCTTTATCAACACAAAGC CTACTACTCTCTACAAACTCCCTCCAAGCCCCAAATCCATTCCAGTAATCAGCAACCTCCTATGGCTCCGCCGCATCTCTCCCTCTAATATCCACTCCAT CCTGAACTCACTCCATGCCAGGTTAGGCCCGATTATAACTATCTACTTAGGCTCCCGCCCTCTCATATTTATAGCCGACCGCTTGCTAGCTCACAAGGCC TTGATCCAAAATGGTGCAGCTTTTGCGAACCGCCCACCAGCTTCTGCTACTCAAAAAATTGTCACCAGCAATCAGCGAAATGTTAGTCTTGCTTTCTATG GCCCGATTTGGCGTCTCCTGCGGCGAAACCTTACTGAAAACTTCCTCCACCCTTCCCGCGCGAAATCTTTCTCTCATTCGCGCCGGTGGGCGCTGCAAGT CCTTAAGAATCGCCTGGCATCCCATGAAAAGTCTGGCCAGCCTATCTGTGTCAGGGAGCACTTTCAATATACCATGTTTTGTCTGTTAGTCGTAATTTGT TTTGGTGATAATGTCGATGAAAACCAGATTAAGCAAATCGAGGAAGCTCAGCGACGAGCCTTTTTGAGTTTCAATAAGTTTAATATACTCAATTTATGGC CAAGAGTGACCAAGATCGTGTTGCGTAGGCGTTGGGAGGAATTCTATCAGCTTCGTAAATGCCAGCTAGACGTATCAATTCCATTAATAAGAACAAGAAA GAATATGCAAGAGGAAGACAGGAAAAGCATGGAACCTCATCATGATCGTGCTTTATGTTATGTCGATACATTATTATCTCTGGAATTTCCCGATGAAGAA AGAAAAATCAATGAGGAGGAGATTGCTAATTTATGCAGCGAGTTTCTAAATGCGGGCACTGATACGACTACAACTTCCCTGGAATGGATCATGGCAAATT TGGTCAAATACCCAAAAATCCAAGACAGGTTATTCATGGAGATTAAAGAGGTTGTTGGAAATGGAGATCAGGAGGAGGTAAGCGAATCTGATCTGAAAAG GATGCCGTATTTGAAAGCAGTGGTCTTGGAAGGCCTGAGGCGGCATCCTCCTGCACGTCTCTTGATTCCACATGCAGTGATGGAGGATGTTGTTTTGAAT AATGAATATTTGATACCAAAGAACGCGGCCATAAATTTCCTAGTTGCTGAGATGGGGTGGGATCCAGAGGCGTGGGAAGATCCACTAACATTCAAGCCGG AAAGGTTTCTGAATCATGATAATGGAATTAGGCAAGAGTTTGATATCACAGGGAGCAGAGAGATCAAAATGATGCCATTTGGTGCTGGGAGGAGAATCTG TCCAGGCTACCAATTAGGAATGCTTCATTTGGAGTATTATGTGGCTAATTTAGTTTGTAAATTTGAGTGGAGGGCTGTGGATGGAGATGGTGTTGATTTG TCTGAGAAGGCAGAGCGTACAATGGTGATGAAGAATCCATTGCGGGTCCGCATATCGCCGAGGTAA
AA sequence Show only first row Show all	>Potri.001G330501.2 pacid=42792076 polypeptide=Potri.001G330501.2.p locus=Potri.001G330501 ID=Potri.001G330501.2.v4.1 annot-version=v4.1 MNRWFLILLSISISISISGILKFIVNRCFINTKPTTLYKLPPSPKSIPVISNLLWLRRISPSNIHSILNSLHARLGPIITIYLGSRPLIFIADRLLAHKA LIQNGAAFANRPPASATQKIVTSNQRNVSLAFYGPIWRLLRRNLTENFLHPSRAKSFSHSRRWALQVLKNRLASHEKSGQPICVREHFQYTMFCLLVVIC FGDNVDENQIKQIEEAQRRAFLSFNKFNILNLWPRVTKIVLRRRWEEFYQLRKCQLDVSIPLIRTRKNMQEEDRKSMEPHHDRALCYVDTLLSLEFPDEE RKINEEEIANLCSEFLNAGTDTTTTSLEWIMANLVKYPKIQDRLFMEIKEVVGNGDQEEVSESDLKRMPYLKAVVLEGLRRHPPARLLIPHAVMEDVVLN NEYLIPKNAAINFLVAEMGWDPEAWEDPLTFKPERFLNHDNGIRQEFDITGSREIKMMPFGAGRRICPGYQLGMLHLEYYVANLVCKFEWRAVDGDGVDL SEKAERTMVMKNPLRVRISPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	0	1
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G119601 [exp]	2.00	0.8433
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.006G079900 [exp]	2.00	0.8315
AT4G01700			Chitinase family protein (.1)		Potri.014G111800 [exp]	3.74	0.8398	CHI2.1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	3.87	0.8348
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	4.00	0.7972	Pt-WRKY22.2
AT1G80450			VQ motif-containing protein (....		Potri.006G266700 [exp]	4.12	0.7602
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	5.47	0.7952
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	5.74	0.7848
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	5.91	0.8232
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	7.21	0.7751

Compare expression of checked genes

Potri.001G330501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.