Plant FIBer expression Database

Potri.001G330800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27110 498 / 2e-178 Peptidase family M48 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032044
[exp]
509 / 0 AT3G27110 503 / 2e-180 Peptidase family M48 family protein (.1.2)
Lus10035210
[exp]
492 / 7e-176 AT3G27110 493 / 4e-176 Peptidase family M48 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01435 Peptidase_M48 Peptidase family M48
Representative CDS sequence
>Potri.001G330800.3 pacid=42787783 polypeptide=Potri.001G330800.3.p locus=Potri.001G330800 ID=Potri.001G330800.3.v4.1 annot-version=v4.1
ATGGCTTCCGTGTCTCTGTCTTCTCTATCTTTGGCTCATAGAAGGAGACCAGATGCTGCTGCTGCTGCTGCTCTTACTTTCAGTTCAAGTGATTTGAGGT
TTTGTTCAGCTTCTTTTGGATTTGGTTTGGCAAAGAAGAATCAAAGAGTCTTTGGTTTGGCAAAGAAGAATCAAAGAGTCAGGGTCTCTGTTTGTAGAGC
TTCTTCTCTTTTTATTCGTAATCTTGATGCTGATGATTTTAGACACCCTCTTGATAAACAGAATACACTGATTTTGAGGGCAATTCCAGGATTAAATGAA
CTGGGGAAGGCTCTATTAGGGTCTGTGACAGAGCAAATCATGCTTCTAGAAAATATTGGGACTTCAGTTCTTGTTTCTAAAAATCAGCTTTCTGAACTTC
ATCAATTGATGACTGAGGCTGCGCAAATATTGAACATGGAGGCCCCTGATCTATATGTTCGGCAAAGTCCTGTACCAAATGCATATACTTTAGCCATAAG
TGGGCAAAAGCCATTTGTTGTTGTGCATACCAGCCTCGTGGAGCTTCTAACAAGAAAGGAGTTGCAGGCTGTCTTGGCTCACGAGTTGGGTCATCTGAAA
TGCGATCACGGAGTATGGCTCACGTTCGCAAATTTTCTTACACTTGGAGCCTATACTGTCCCTGGAATTGGTTGGTTGATAGCTCAGAATTTAGAAGAAC
AATTATTCCGTTGGCTCCGAGCAGCAGAGCTTACTTGTGACCGTGCAGCCCTTCTTGTTGCCCAAGACCCTAAGGTGGTCATCTCTGTTTTGATGAAATT
AGCTGGGGGAAGCCCATCAATTGCTGATCAGCTAAACGTTGATGCATTCTTGGAACAAGCGCGCTCTTATGATAGAGCTTCTTCAAGTTCAGTGGGATTG
TACATAAGAAATGCTCAAACAAAACAACTCTCACATCCTCTGCCTGTTCTGCGAGCTCGTGAAATTGATGAATGGTCGAGAAGTCTAGACTACCAGCAGC
TTCTGAAACGTGCAATACAGATAACCACTCCACAGAATGTTTAG
AA sequence
>Potri.001G330800.3 pacid=42787783 polypeptide=Potri.001G330800.3.p locus=Potri.001G330800 ID=Potri.001G330800.3.v4.1 annot-version=v4.1
MASVSLSSLSLAHRRRPDAAAAAALTFSSSDLRFCSASFGFGLAKKNQRVFGLAKKNQRVRVSVCRASSLFIRNLDADDFRHPLDKQNTLILRAIPGLNE
LGKALLGSVTEQIMLLENIGTSVLVSKNQLSELHQLMTEAAQILNMEAPDLYVRQSPVPNAYTLAISGQKPFVVVHTSLVELLTRKELQAVLAHELGHLK
CDHGVWLTFANFLTLGAYTVPGIGWLIAQNLEEQLFRWLRAAELTCDRAALLVAQDPKVVISVLMKLAGGSPSIADQLNVDAFLEQARSYDRASSSSVGL
YIRNAQTKQLSHPLPVLRAREIDEWSRSLDYQQLLKRAIQITTPQNV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27110 Peptidase family M48 family pr... Potri.001G330800
[exp]
0 1
AT3G20930 RNA-binding (RRM/RBD/RNP motif... Potri.010G237200
[exp]
2.44 0.9757
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Potri.002G012000
[exp]
3.00 0.9732 FTSH2.2
AT4G25640 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, ... Potri.015G147600
[exp]
3.60 0.9531
AT3G46610 Pentatricopeptide repeat (PPR-... Potri.017G070800
[exp]
5.09 0.9735
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Potri.007G043700
[exp]
6.00 0.9620
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Potri.007G044300
[exp]
6.48 0.9599 Pt-ZEAEPOX.1
AT2G35660 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreduct... Potri.001G152600
[exp]
6.63 0.9698 Pt-CTF2.2
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
9.48 0.9690 Pt-CLPR1.1
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G017232
[exp]
13.85 0.9518
AT3G61440 ATCYSC1, ARATH;... BETA-SUBSTITUTED ALA SYNTHASE ... Potri.002G160800
[exp]
15.09 0.9232 Pt-ATCYSC1.3

Potri.001G330800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.