Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SOX.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01910 686 / 0 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT1G37130 209 / 5e-60 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 207 / 2e-59 GNR1, NIA1 nitrate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172400 [exp] 205 / 1e-58 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 201 / 3e-57 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032048 [exp] 654 / 0 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 649 / 0 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10012532 [exp] 643 / 0 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 548 / 0 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10038977 [exp] 205 / 1e-58 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 202 / 9e-58 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10035402 [exp] 202 / 2e-57 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10041561 [exp] 135 / 2e-39 AT3G01910 119 / 3e-35 sulfite oxidase (.1.2.3) Lus10031005 [exp] 44 / 0.0002 AT1G77760 559 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00174 [poplar] [flax] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0159 [poplar] [flax] E-set PF03404 [poplar] [flax] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G330900.6 pacid=42789048 polypeptide=Potri.001G330900.6.p locus=Potri.001G330900 ID=Potri.001G330900.6.v4.1 annot-version=v4.1 ATGCCAGGAGTGAAAGGACCTTCAGATTACTTGCAAGAACCACCTCGTCACCCTTCCCTCCAAATCAATTCCAAGTATCCTTTCAATGCCGAACCACCTC GTTCGGCCTTGATTTCCTCTTATGTGACGCCTGTGGATTTGTTCTACAAGAGAAATCATGGTCCCATTCCAGTTGTTGATGACATAGAAAGATACTCTGT TTTGATTCGTGGTTTGATCGACAACCCTAGAGACCTGTTCATGAGAGATATCAAGATGCTTCCAAAATATAATGTCACTGCCACCTTACAGTGTGCTGGA AACAGAAGGACTGCCATGAGCAAAGTCAAAACAGTGAAAGGGGTTGGCTGGGATGTTTCTGCTATTGGAAATGGTGTCTGGGGTGGTGCCAAATTGGCTG ATGTTCTTGAACTTGTTGGGATATCTAAGTTGACAAGTACCACTAAATCAGGTGGAAAACATGTTGAATTTGTAAGCATTGATAAGTGTAAGGAGGAGAA TGGAGGCCCATACAAGGCATCAATTCCGCTCAGTCAGGCTACAAACCCTGAAGCTGATGTTTTGGTTGCTTATGAGATGAATGGAGAGCCTCTAAACAGG GATCATGGTTATCCATTGCGAGTGGTTGTACCAGGTGTTATAGGTGCCCGATCTGTCAAATGGTTGGATTGTATCAACATCATTGCAGAAGAATCCCAGG GATTCTTTATGCAAAAGGACTATAAAATGTTTCCTCCTTCAGTGAATTGGGACAACATCAATTGGTCTACAAGGAGGCCTCAAATGGATTTTCCTGTTCA GAGTGCAATTTGTTCATTAGAGGATGTCACTGCAATAAAGCCTGGGAAGGTTAAAGTCAGTGGATATGCAGCATCTGGAGGTGGCCGTGGAATTGATAGA GTAGATGTGTCTGTTGATGGTGGCAAAACCTGGGTGGAAGCCTCCAGGTACCAGAAGCCTGGCGTCCAATACATCTCAGATGATATGAACAGTGACAAAT GGGCCTGGGTTCTTTTTGATGTGACAGTTGATGCTCCACAGAGCACAGAGATAGTTGTTAAAGCAGTGGATTCGGCAGCAAATGTCCAGCCTGAAAATGT GCAGGAGATTTGGAATTTGAGAGGGATACTCAACACTTCATGGCACCGGGTTCAGGTCCGAGTTGGTCACTCAAATATGTAA
AA sequence Show only first row Show all	>Potri.001G330900.6 pacid=42789048 polypeptide=Potri.001G330900.6.p locus=Potri.001G330900 ID=Potri.001G330900.6.v4.1 annot-version=v4.1 MPGVKGPSDYLQEPPRHPSLQINSKYPFNAEPPRSALISSYVTPVDLFYKRNHGPIPVVDDIERYSVLIRGLIDNPRDLFMRDIKMLPKYNVTATLQCAG NRRTAMSKVKTVKGVGWDVSAIGNGVWGGAKLADVLELVGISKLTSTTKSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADVLVAYEMNGEPLNR DHGYPLRVVVPGVIGARSVKWLDCINIIAEESQGFFMQKDYKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVTAIKPGKVKVSGYAASGGGRGIDR VDVSVDGGKTWVEASRYQKPGVQYISDDMNSDKWAWVLFDVTVDAPQSTEIVVKAVDSAANVQPENVQEIWNLRGILNTSWHRVQVRVGHSNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Potri.001G330900 [exp]	0	1	SOX.1
AT1G10310			NAD(P)-binding Rossmann-fold s...		Potri.004G228533 [exp]	2.82	0.8316
AT1G69740		HEMB1	Aldolase superfamily protein (...		Potri.002G082300 [exp]	11.57	0.8236	Pt-ALAD.1
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	16.88	0.7747
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	33.67	0.7925
AT4G25550			Cleavage/polyadenylation speci...		Potri.015G143300 [exp]	34.20	0.7870
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.002G031800 [exp]	36.12	0.7976
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	39.16	0.7521	HTA907
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.001G094100 [exp]	39.38	0.7601
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	49.98	0.7744
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.002G183400 [exp]	51.33	0.7236	Pt-PPI1.3

Compare expression of checked genes

Potri.001G330900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.