Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHC901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 753 / 0 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 613 / 0 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 53 / 3e-08 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 44 / 3e-05 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 43 / 4e-05 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 46 / 7e-05 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 44 / 0.0002 SWIB complex BAF60b domain-containing protein (.1) AT1G31760 42 / 0.0002 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 42 / 0.0002 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069300 [exp] 876 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.012G096700 [exp] 648 / 0 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.015G094500 [exp] 602 / 0 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 60 / 2e-09 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 50 / 3e-06 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 49 / 7e-06 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 45 / 1e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 45 / 2e-05 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 42 / 0.0002 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032049 [exp] 753 / 0 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 579 / 0 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10016761 [exp] 514 / 2e-178 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10022456 [exp] 511 / 3e-177 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 53 / 5e-08 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 47 / 1e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 48 / 1e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 47 / 3e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10035215 [exp] 0 / 1 AT5G14170 56 / 1e-14 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G331400.1 pacid=42788735 polypeptide=Potri.001G331400.1.p locus=Potri.001G331400 ID=Potri.001G331400.1.v4.1 annot-version=v4.1 ATGTCTATGAACAACAACAACAACAATAATAACCCGCCAAAGAGTTTGGGGCAATCTTCGTCACCATTCGGTAATTCAGGGATGGTCAATCCATCGATGG GCGCGAACCCAACATTCCCACAAGCGCAAGCGCAGATGGGTGCTGGCTTTCAGGGTGGTCAGTTCCAGCTGTCCCAAGCACAGGCTACTTTGCAAGCCCA TTTGAAAGCGCAGCAGGCTCATGCTCAGGCACAAGCAGCTCACGCTGCTCAAGTTCAAGCAGCTCATGCACAATTCCAAGCGCAATTACAAGCGCAAGGG GTTTCTCTTAACCAAAATCAGAGTGCTGGAATAGGCAATTTGGGTTCATCTTCACCGTCATTCTCGACTCCTGGCAATGCTAGTGCAAAACGGCTCCCTC AGAAACCTCTGGGTAGACCTCCTGGTGTTCCCATGTCGAGCATGGTTTCACCATTGAAACCCATGGATCTTTCTTCCGCTGCACGTAGGAAGAAGCAGAA GCTACCAGAGAAGCAGCTACAAGATAGAGTAGCAGCAATTCTGCCAGAGTCTGCTCTGTACACCCAGCTTCTTGAGTTTGAAACCCGTGTTGATGCTGCT TTAGCTAGAAAGAAGGTCGACATCCAGGAGGCGCTTAAAAGCCCTCCTTGTGTTCAGAAAACCCTTCGAATTTATGTCTTCAATACATTTGCCAATCAGA TAAGAACAATCCCCAAGAAGCCAAATGCTGACCCTCCGACTTGGACTCTTAAAGTTATCGGGAGAATCTTGGAAGATGGGGTAGACCCTGACCAGCCTGG AGCAGTCCAGAAATCAAACCCATTGTACCCAAAGTTCTCATCTTTTTTCAAGAGAGTGTCAATTCAGTTGGATCAGAGACTATATCCTGATAATCATATC ATTATATGGGAGCATGCTCGATCACCTGCACCTCACGAGGGTTTTGAAGTCAAGAGAAAAGGGGACAAAGAGTTCTCTGTGAATATACGATTGGAAATGA ATTATGTGCCTGAGAAATTTAAGCTCTCTCCAGCTTTGATGGAAGTTCTTGGTATAGAGGTTGAAACCCGTCCTAGAATAATAGCTGCAATTTGGCATTA TGTGAAGGCTAGGAAACTGCAGAACCCTGAGGACCCTTCATTTTTCAATTGCGACGCACCTCTTCAGAAAGTATTTGGGGAATCAAAGATGAAGTTCACG ATGGTTTCACAGAGGATATCTCAGCATTTATCTCCTCCACAGCCGATACATTTGGAGCATAAAATTAAGCTATCGGGGAATAGTCCAGCTGGAACTGTCT GCTATGATGTGGTGGTTGACGTGCCATTCCCAATACAGAGGGAGTTGTCTGCTTTGTTGGCAAATGCTGAGAAGAATAAAGAGATTGATACTTGTGATGA GGCGATATGTACTGCTATAAGGAAAATTCATGAACATCGTCGGAGACGCGCATTCTTCCTTGGATTTAGTCAATCACCTGTCGAATTTGTCAATGCTCTC ATTGAATCTCAAAGCAAGGATTTGAAGCTGGTAGCTGGAGAAGCTAGTAGAAATGCCGAGAAAGAGCGCCGCTCAGATTTCTTTAACCAGCCATGGGTTG AAGATGCTGTAATTCGATATTTGAATCGCAAGCCCGCTGCCGGAAGCGATGCTCCTCGGAGCATGTGA
AA sequence Show only first row Show all	>Potri.001G331400.1 pacid=42788735 polypeptide=Potri.001G331400.1.p locus=Potri.001G331400 ID=Potri.001G331400.1.v4.1 annot-version=v4.1 MSMNNNNNNNNPPKSLGQSSSPFGNSGMVNPSMGANPTFPQAQAQMGAGFQGGQFQLSQAQATLQAHLKAQQAHAQAQAAHAAQVQAAHAQFQAQLQAQG VSLNQNQSAGIGNLGSSSPSFSTPGNASAKRLPQKPLGRPPGVPMSSMVSPLKPMDLSSAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFETRVDAA LARKKVDIQEALKSPPCVQKTLRIYVFNTFANQIRTIPKKPNADPPTWTLKVIGRILEDGVDPDQPGAVQKSNPLYPKFSSFFKRVSIQLDQRLYPDNHI IIWEHARSPAPHEGFEVKRKGDKEFSVNIRLEMNYVPEKFKLSPALMEVLGIEVETRPRIIAAIWHYVKARKLQNPEDPSFFNCDAPLQKVFGESKMKFT MVSQRISQHLSPPQPIHLEHKIKLSGNSPAGTVCYDVVVDVPFPIQRELSALLANAEKNKEIDTCDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFVNAL IESQSKDLKLVAGEASRNAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPRSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	0	1	CHC901
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	1.41	0.9206
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	2.44	0.9183
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	3.46	0.9155
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	5.47	0.9077	Pt-DGD2.1
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	6.00	0.9103
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	7.21	0.8980
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	7.48	0.9062
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	7.74	0.9043
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	8.36	0.9094
AT2G47820			unknown protein		Potri.008G210200 [exp]	9.16	0.8988

Compare expression of checked genes

Potri.001G331400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.