Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 316 / 2e-104 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 219 / 8e-67 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 217 / 2e-66 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G14330 218 / 5e-66 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 211 / 2e-63 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G74510 211 / 3e-63 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 82 / 9e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 81 / 4e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 65 / 2e-11 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069500 [exp] 729 / 0 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 241 / 4e-75 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 237 / 3e-73 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G063200 [exp] 220 / 8e-67 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 93 / 1e-20 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G008000 [exp] 91 / 1e-19 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 90 / 2e-19 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G170000 [exp] 87 / 2e-18 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 84 / 2e-17 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037413 [exp] 226 / 7e-70 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 225 / 2e-69 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 222 / 2e-68 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 214 / 7e-65 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 213 / 3e-64 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 212 / 7e-64 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 210 / 8e-64 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10024239 [exp] 83 / 2e-17 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 83 / 6e-17 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 79 / 2e-15 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.001G331500.4 pacid=42791408 polypeptide=Potri.001G331500.4.p locus=Potri.001G331500 ID=Potri.001G331500.4.v4.1 annot-version=v4.1 ATGTCCAAAGGAAAAGAGTTGGGGAGTGAAGATGGAAGAGGGGATGTGAGCAGAAATGATCCTGATCCTAGTAAGAAAAGGATGCTGGCAGAGGACTCTG GCAATAGCTCTTGGATTGCTTCTAATAGCCCCCCGATGAAAAAGATTGGTGTTTGTGAAATTAGTAGAGGAGGATCGGGGTGTTATAATTTCTTTTGCAG CAATGGTAGAGTTGGTGATTCGTCAAATGTAAAACCTCAGGATACAGATTACTCCTATGCTCCCCAACTAAGTGATGAGTTAGAGAATCTGATTTTGGCA AGAGTTCCAAGATCAGAGTACTGGAAGTTTCCAAACGTGAACAAGCGGATACTCTCTCTTGTAAAGAGTGGTGAGCTCTTTAAGATTAGGAGGGAAATTG GTGTTAGAGAATCATCTGTTTTTATTTTTGCAACCGGGGACAAAAGTTGGTGGGCATTTGATAGACAATTCTGTTCTCGCAGGAAACTTCCAGATCTACC AGCAGACTGTTGTTTCTCTTTTGGAGATAAGGAATCCCTTTGTGCAGGGACCCATCTGATTATTTCAGGCAGGGAGATAGAGGGGGTTGTTGTTTGGAGA TATGAATTGGAAACAAACAGCTGGAATAAGGGTCCTTCCATGATCAATCCTAGGTGTTTGTTTGCGTCTGCATCCTGTGGTGCCTTTGCTTTTGTAGCTG GTGGAGTGACCGGCACTGGTGTTGATGTTCTAAATTCTGCAGAGAAATATAATCCAGATACTAAATCATGGGAAGACCTTCCAAGGATGCGGCAAAGAAG AAAGCTTTGCTCTGGTTGTTTCATGGATAACAAATTTTATGTGATTGGAGGACGGAACGAGGAGGGAAATGTTCTGACTTGTGCTGAAGCCTATGATGAG GATAAAAAGGCATGGGACCTGATCCCAGACATGTTGGAGGATACACCAATCGCTACTTTCCAATCTCCACCCCTCATTGCTGTTGTGAACAATGAGCTTT ACGCCCTTGAGCCTTCATCAAACCAGTTGAAGGTATACTTGAAAAGGAGCAGAACATGGAAGAAATTAGGAGCAGTGCCGGTAAGAGCAGATTCTAACAA AGGATGGGGTGTAGCCTTCAAGTCTCTGGGCAATGAACTACTTGTAATAGGTGCATCTACATCCACAGTTTCTTATTCCGGGGATGGCATGGCTATATAC ACCTGCAGACCTGATTCTGAAGCTGAAGAATTGCAATGGAGGCCTCTTGAGTGTGGCAAAAACAGGCTGAGTAACTTTATATTGAACTGCTCTGTTATGG TAGCTTGA
AA sequence Show only first row Show all	>Potri.001G331500.4 pacid=42791408 polypeptide=Potri.001G331500.4.p locus=Potri.001G331500 ID=Potri.001G331500.4.v4.1 annot-version=v4.1 MSKGKELGSEDGRGDVSRNDPDPSKKRMLAEDSGNSSWIASNSPPMKKIGVCEISRGGSGCYNFFCSNGRVGDSSNVKPQDTDYSYAPQLSDELENLILA RVPRSEYWKFPNVNKRILSLVKSGELFKIRREIGVRESSVFIFATGDKSWWAFDRQFCSRRKLPDLPADCCFSFGDKESLCAGTHLIISGREIEGVVVWR YELETNSWNKGPSMINPRCLFASASCGAFAFVAGGVTGTGVDVLNSAEKYNPDTKSWEDLPRMRQRRKLCSGCFMDNKFYVIGGRNEEGNVLTCAEAYDE DKKAWDLIPDMLEDTPIATFQSPPLIAVVNNELYALEPSSNQLKVYLKRSRTWKKLGAVPVRADSNKGWGVAFKSLGNELLVIGASTSTVSYSGDGMAIY TCRPDSEAEELQWRPLECGKNRLSNFILNCSVMVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	2.00	0.9568
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	4.24	0.9655
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	4.24	0.9352
AT1G55230			Family of unknown function (DU...		Potri.001G008900 [exp]	4.69	0.9576
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	4.89	0.9494
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	5.09	0.9283
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	5.29	0.9268
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Potri.007G027900 [exp]	5.74	0.9575
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	9.16	0.9398
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	10.29	0.9112

Compare expression of checked genes

Potri.001G331500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.