Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLC.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27170 1258 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 1214 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G33280 797 / 0 Voltage-gated chloride channel family protein (.1) AT5G49890 764 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G26240 536 / 3e-180 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064000 [exp] 822 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 820 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.004G228300 [exp] 779 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.003G001500 [exp] 779 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 736 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 728 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.010G090100 [exp] 561 / 0 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012526 [exp] 1329 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10038118 [exp] 793 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10007433 [exp] 780 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 778 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10002453 [exp] 567 / 0 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 547 / 0 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 484 / 6e-167 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 290 / 5e-93 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.001G331700.1 pacid=42789657 polypeptide=Potri.001G331700.1.p locus=Potri.001G331700 ID=Potri.001G331700.1.v4.1 annot-version=v4.1 ATGGAGGCAGATTCAAGCCAATTGGCAGAAGCAACAGCAGGTCATAACTTGGAAGTTGGTGAAGAAGGAAGAGACCCAGAAAGCAATACACTTCACCAGC CACTCCTCAAGAGAAATAGGACACTATCTTCTAATCCACTAGCCTTGGTTGGAGCCAAGGTCTCACATATAGAGAGTTTGGATTACGAGATCAATGAGAA TGATCTTTTCAAGCACGATTGGAGAAGCAGATCCAAAGTTCAAGTCTTGCAGTATATATTCTGGAAATGGACATTGGCCTTTCTTGTTGGACTTTTAACT GGATTAATTGCAACCTTCATCAATCTTGCAGTTGAGAACATTGCTGGTTACAAGATTCTTGCTGTGGTTCACTTTATAGAGAATAAAAGGTATTTGACAG GGCTAGTCTACTTCACAGGGGCTAATCTTCTCTTAACCTTATTTGCTTCCGTCCTGTGCGTGTGTTTTGCACCAACTGCAGCAGGGCCTGGTATACCTGA AATCAAAGCTTATCTCAATGGAGTTGATACTCCTAACATGTTTGGGGTTACAACATTGATCGTTAAGATATTTGGAAGCATAGGAGCTGTCTCTGCTGGA CTTGATTTAGGGAAAGAAGGGCCTCTGGTGCACATTGGCAGCTGCATTGCTTCCTTGTTAGGCCAAGGGGGACCTGATAATTACCGACTCAAGTGGCGCT GGCTTCGTTATTTCAACAATGACAGAGACCGCCGAGATATCATCACCTGCGGTGCTTCCTCGGGTGTTTGTGCAGCTTTCCGTTCCCCAGTGGGTGGTGT CCTCTTTGCTCTTGAAGAGGTAGCAACATGGTGGAGGAGTGCACTCCTCTGGAGAACTTTCTTCAGCACAGCAGTAGTTGTGGTAATCCTCAGGACTTTC ATTGAAATATGCAATTCAGGGAAGTGTGGACTGTTTGGAAAAGGAGGGCTGATAATGTTCGATGTGAGCGATGTTGTGGTGACATACCATGTGATGGATG TCATCCCTATCACCATAATTGGCATACTTGGAGGAATTCTGGGAAGCCTCTACAATTACCTTCTCCACAAGGTCCTTGTAGTCTACAATCTCATCAACCA GAAGGGAAGAATACATAAGCTCCTTCTCGCCCTAACTGTTTCAATCTTTACCTCAGTGTGTCTATATGGCTTACCTTTCCTTGCCAAGTGCCAACCTTGT GATCCCTCTGTACAAGAGATCTGCCCTACTAATTCCCGGTCAGGCAACTTCAAGCAATTCAACTGTCCAGATGGCCACTATAATGACCTTGCTACTCTCC TTTTCACAACAAATGATGATGCCGTTCGAAACATCTTCTCTTCCAATGCTCTTAAGGAGTTTCAGCCTGCATCCCTCCTAATTTTCTTTGTACTCTATTG CATCCTAGGACTATTTACCTTCGGCATTGCTGTGCCTTCAGGACTTTTCCTCCCCATCATCCTTATGGGCTCAGCTTATGGCCGTCTGCTTGGTATTGCC ATGGGGTCCTATACCAAAATTGATCAAGGGCTTTATGCTGTTCTTGGTGCAGCCTCCCTCATGGCTGGATCGATGAGGATGACTGTTTCACTCTGTGTGA TTTTCCTTGAACTCACCAACAACCTCCTATTACTTCCCATAACAATGATAGTTCTCCTTATATCCAAAACTGTTGGAGACAGCTTTAATCCAAGCATCTA TGAAATTATTCTGGATCTAAAAGGCCTGCCTTTCTTGGACGCGAACCCTGAGCCATGGATGAGAAATCTCACTGTTGCTGAGCTTGCTGATGCCAAACCA CCAGTAGTCACTCTTTGTGGAGTTGAAAAGGTATCCCGGATTGTTGAAGTCCTCGAAAACACCACGCATAATGGATTCCCAGTTGTAGACGAAGGAGTGG TGCCACTTATGGGGCTGGCCACTGGGGCAACAGAACTACATGGCCTGATCCTGAGAGCTCACCTAGTTCAAGTGCTGAAGAAAAAGTGGTTCTTGCCAGA GAAAAGAAGAACAGAGGAATGGGAAGTAAGAGAGAAATTTGACTGGGTTGAGCTAGCTGAGAGGGATGGAACAATTGAAGAGGTGGCTGTGACAAGGAAT GAGATGGAAATGTATGTTGACTTGCATCCTCTCACCAACACAACCCCTTACACAGTCGTGGAGAGCATGTCAGTAGCAAAAGCCATGGTGCTCTTCAGGC AGGTGGGACTTCGCCATATGCTCATTCTACCCAAGTATCAAGCAGCTGGGGTCCCTCCAGTGGTTGGGATACTGACCAGGCAGGATTTAAGAGCACATAA CATCTTGCTTGCCTTTCCTCATTTGCAAGGATCCAAAAGCAGAGAAAAGAAGCACTAG
AA sequence Show only first row Show all	>Potri.001G331700.1 pacid=42789657 polypeptide=Potri.001G331700.1.p locus=Potri.001G331700 ID=Potri.001G331700.1.v4.1 annot-version=v4.1 MEADSSQLAEATAGHNLEVGEEGRDPESNTLHQPLLKRNRTLSSNPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFWKWTLAFLVGLLT GLIATFINLAVENIAGYKILAVVHFIENKRYLTGLVYFTGANLLLTLFASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGVTTLIVKIFGSIGAVSAG LDLGKEGPLVHIGSCIASLLGQGGPDNYRLKWRWLRYFNNDRDRRDIITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRTF IEICNSGKCGLFGKGGLIMFDVSDVVVTYHVMDVIPITIIGILGGILGSLYNYLLHKVLVVYNLINQKGRIHKLLLALTVSIFTSVCLYGLPFLAKCQPC DPSVQEICPTNSRSGNFKQFNCPDGHYNDLATLLFTTNDDAVRNIFSSNALKEFQPASLLIFFVLYCILGLFTFGIAVPSGLFLPIILMGSAYGRLLGIA MGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLISKTVGDSFNPSIYEIILDLKGLPFLDANPEPWMRNLTVAELADAKP PVVTLCGVEKVSRIVEVLENTTHNGFPVVDEGVVPLMGLATGATELHGLILRAHLVQVLKKKWFLPEKRRTEEWEVREKFDWVELAERDGTIEEVAVTRN EMEMYVDLHPLTNTTPYTVVESMSVAKAMVLFRQVGLRHMLILPKYQAAGVPPVVGILTRQDLRAHNILLAFPHLQGSKSREKKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Potri.001G331700 [exp]	0	1	CLC.5
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.004G147600 [exp]	7.87	0.9574
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.007G053600 [exp]	9.11	0.9249	LBD37.1
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.003G038500 [exp]	12.72	0.9527	BGAL1.2
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.017G133732 [exp]	23.00	0.9425
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	30.24	0.9480	QLEG.3
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.001G137800 [exp]	38.30	0.9470
					Potri.018G115601 [exp]	42.77	0.9443
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	43.93	0.9459
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	48.37	0.9450
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.014G139100 [exp]	49.85	0.9429

Compare expression of checked genes

Potri.001G331700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.