Plant FIBer expression Database

Potri.001G331900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27180 633 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012527
[exp]
676 / 0 AT3G27180 690 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10041566
[exp]
618 / 0 AT3G27180 638 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03602 Cons_hypoth95 Conserved hypothetical protein 95
Representative CDS sequence
>Potri.001G331900.1 pacid=42788626 polypeptide=Potri.001G331900.1.p locus=Potri.001G331900 ID=Potri.001G331900.1.v4.1 annot-version=v4.1
ATGCCTCTGTGCCTCCTCCCTAACCGCCTGTTACCTTTACCTTACTGTCCTCTCATCACCTGCCACGCGTCACCAGCGGCACTCCGTTCCTCTCCCTCCT
CGCCACCACCAACACTCCCTAACCTCCTCAACAACACAACCCCCGTCCCCTCCCTATCCTGCGCCCTCCAGTGTCCTCACTTCCAATCCTGCTCTGGTTG
CACGCATGAACTCAATCTCCACCGTCCGATTATCGTCGACGAGGCTGATCAATTTTTTAAGAGTGTAGGAGTTTCAGATTTCGATTTTGATAGCAGTAGA
CTGTGGGGATGGAGGAGTCGGGCAAAACTGGCCGTTCGTGGTTCCTCGATGAAGCCGCTGATTGGGCTTTATGAAGAAGGCACTCATAACGTAGTAGACA
TCCCCCATTGTAAAGCTCATCATCCGAATATTAATGCGGCCGTTGAACTGCTGAGACAAGGTGTTACTAAGTTGAATATCGAGCCATACGATGAAGATGA
GGGGACAGGCGAATTGCGATATGTTCAGATGGCCGTGACGACTTACAATACGTCTCTTCCTGCCCCAGAGAGATATAAAAATGGTAAGGTGCAGGTCTCC
TTAGTTTGGAATTCGAGAAATGAGAATTCTCATAATTTTGAAAAATTAAATGCCTTGGCTAATTTTTTATGGAGGAATGGGGGACCAAAGAGTGACGTCA
GGTTTATTCACTCTGTATGGGCTAACTTTCAGACATCAACAAACAATATTATTTTTGGCAATAGATGGAGGCATCTTTTAGGAGAAAGTGGCTTTTGGGA
ACATGCAGGAGGAATTGATGTGTCCTTGTCTCCCTCCAGTTTTGGACAAGCTAACACTCGGGCTTTTGATATCCTGCTGCGGAAGTTACAAAAATATGTT
CCGTATGGAGCATCTGTCACTGATTTGTATGCAGGAGCTGGTGCAATTGGATTATCATTGGCAGCCACTAGGAAATGCAGATCTGTTAAATGTGTTGAGG
TTAACAAAGAGTCAAAGCTGTCTTTTGAGAAGACAGTTGAACGCCTTCCAAACTATGTAGATAGCAGCATTAGTTGGCATCTTGCAGACACTTCAGTTGA
ACCTCTTTCTTGGCTCATGGGGTCAGAAGTAGTTGTTGTAGATCCTCCTAGAAAGGGACTCGATGCATCTCTTCTTGATGTATTACGGACTATATCGTCA
CTGGAGCGCAAGGCTAAATCAGCACCTGAGAGCTCTTATTCAAAGGTCAAAGATGAGAAAAGACCATGGGTGTTACGTGCAATGAAAGATTCAGTTCAAA
TTGGAAGCAAGCCAGCTCTTGAGGGCTCAGAATCACTGCCTCAAACACTTATTTATATAAGCTGTGGATGGGAAAGCTTCAAAGAGGATTGCAAGTCATT
GTTATCTAGTAAGAAATGGCGTCTGGAAAAGGCTCATGGTTTTAACTTCTTTCCTGGCACCCAAAGCATCGAAATTTTAGCTGTGTTCAAGAGGGGCCAA
CGAGCAGGTCTCAAGAAAAAGAAATCCGGGAAGAAGAAAAAACGCTTATGA
AA sequence
>Potri.001G331900.1 pacid=42788626 polypeptide=Potri.001G331900.1.p locus=Potri.001G331900 ID=Potri.001G331900.1.v4.1 annot-version=v4.1
MPLCLLPNRLLPLPYCPLITCHASPAALRSSPSSPPPTLPNLLNNTTPVPSLSCALQCPHFQSCSGCTHELNLHRPIIVDEADQFFKSVGVSDFDFDSSR
LWGWRSRAKLAVRGSSMKPLIGLYEEGTHNVVDIPHCKAHHPNINAAVELLRQGVTKLNIEPYDEDEGTGELRYVQMAVTTYNTSLPAPERYKNGKVQVS
LVWNSRNENSHNFEKLNALANFLWRNGGPKSDVRFIHSVWANFQTSTNNIIFGNRWRHLLGESGFWEHAGGIDVSLSPSSFGQANTRAFDILLRKLQKYV
PYGASVTDLYAGAGAIGLSLAATRKCRSVKCVEVNKESKLSFEKTVERLPNYVDSSISWHLADTSVEPLSWLMGSEVVVVDPPRKGLDASLLDVLRTISS
LERKAKSAPESSYSKVKDEKRPWVLRAMKDSVQIGSKPALEGSESLPQTLIYISCGWESFKEDCKSLLSSKKWRLEKAHGFNFFPGTQSIEILAVFKRGQ
RAGLKKKKSGKKKKRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27180 S-adenosyl-L-methionine-depend... Potri.001G331900
[exp]
0 1
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.001G249800
[exp]
1.00 0.9833
AT3G23070 ATCFM3A CRM family member 3A (.1) Potri.010G077100
[exp]
4.24 0.9693
AT3G10130 SOUL heme-binding family prote... Potri.016G098500
[exp]
4.47 0.9651
AT1G03670 ankyrin repeat family protein ... Potri.018G077766
[exp]
4.47 0.9639
AT3G18390 EMB1865 embryo defective 1865, CRS1 / ... Potri.012G056100
[exp]
5.19 0.9593
AT4G24090 unknown protein Potri.001G084500
[exp]
5.47 0.9655
AT1G26230 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn6... Potri.010G135100
[exp]
5.74 0.9563
AT4G14605 Mitochondrial transcription te... Potri.017G067600
[exp]
6.32 0.9460
AT5G63420 Trihelix EMB2746 embryo defective 2746, RNA-met... Potri.012G095800
[exp]
7.48 0.9616
AT1G01320 Tetratricopeptide repeat (TPR)... Potri.002G170900
[exp]
9.48 0.9520

Potri.001G331900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.